Report for Sequence Feature Glyma19g42280
Feature Type: gene_model
Chromosome: Gm19
Start: 48294125
stop: 48299090
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g42280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G44160 AT
Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein | chr5:17773091-17775513 FORWARD LENGTH=466
SoyBase E_val: 9.00E-107 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0006826 GO-bp
Annotation by Michelle Graham. GO Biological Process: iron ion transport
SoyBase N/A ISS
GO:0010106 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation
SoyBase N/A ISS
GO:0010167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to nitrate
SoyBase N/A ISS
GO:0010260 GO-bp
Annotation by Michelle Graham. GO Biological Process: organ senescence
SoyBase N/A ISS
GO:0015706 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrate transport
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0048510 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of timing of transition from vegetative to reproductive phase
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG3576
KOG
Ovo and related transcription factors
JGI ISS
PTHR10593 Panther
SERINE/THREONINE-PROTEIN KINASE RIO
JGI ISS
UniRef100_G7I8M7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein-like protein n=1 Tax=Medicago truncatula RepID=G7I8M7_MEDTR
SoyBase E_val: 1.00E-177 ISS
UniRef100_I1NBY8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBY8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g42280
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g42280
Paralog Evidence Comments
Glyma03g39650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g42280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g234500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g42280
Coding sequences of Glyma19g42280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g42280.1 sequence type=CDS gene model=Glyma19g42280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAAACTCAAACATCACAAGTTGTGATAGTTGGAGCTTCACTACAGAGAATAATAATAATGGAGAAGATGCAGCAGCAACTGTTAAACAGCAATTGGAGATGCTTGGCCAGCTTTATAGTCCAAATTCAAACACTTCAACCACAACAAATAATAGCAATGGTGGCTCAAACGCAGATTCACAACCACCTGCTAAGAAGAAAAGAAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATAGCACTCTCACCAAACACCCTGGTGGCCACAAACAGGTTCATATGTGAAATATGCAACAAAGGGTTTCAAAGGGACCAAAACCTTCAATTGCACCGTCGAGGCCATAACCTACCGTGGAAGCTGAAACTGAGAACCACCACTGAAGTTCGAAAACGGGTTTATGTTTGTCCTGAACCCTCATGTGTGCATCACAACCCAGCTCGTGCACTAGGTGATCTCACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGACAAGAAGTGGAAATGTGAGAAGTGCTCCAAGAAATATGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATATGCGGAACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGACAGTTTCGTCACCCACAGAGCTTTCTGCGATGCACTGAGTGAGGAGAACAACAAGTGCAACGAAGTGCCAAAGATGCATGGTTCAAACTTGCAACCACCAATAATTCCAAACATAGTTGCATCATTACCAATAATCAATGCCAACAATCACAAGAACCCATTTTCACTCCCACACGACCTCATGACAACAATTCCCGCAAAACCCTTCAACAACATGGCTGCAGCATTCACGAGAAGCCTTTCATCCACCTCTTCACCCTCTCAACTAAGCTCAAATTCACCAAACATTAATATGTTGGTGGAAAATGGTCTCCTTTCACCTCACATGTCCGCCACGGCATTGCTCCAAAAAGCAGCACAAATGGGTGCAACAGTGAATAGTAACAACAACAGCATGATGAGTAGTGATGAAAAAAGCTTTATTGTCACAAGCATGGCACCACCATCATATGGGATCATGAACCACAACATGCACAATGGTCAACAAGACTTGTCACAATATAATTTCAATGCGAATGGGATGGTGGATGGTGGTAGCAATAATGGCATGGGAATGGGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAACAGAAACAGTACTTATAATGGTGTTTTGCATGCAATGAATAATGGTAAGTCAAGTGACCCCATTGAAGGTGGTGGAACTAAAGGGAGTGAAGCTGTGAATCATGTGATGACTTTGGACTTGTTGGGGATAGGAGGTGGTGGTGGAGATGGTAATTTCTATGGTGGTGATCAACAGTCAGAAATAGCTGCTGGAGATGGAATATGGAGAAATTGGTCAAATAAGAATGCAGGGCTTGAATCATTTTCAGCAACAAACAGCACTATGTGA
Predicted protein sequences of Glyma19g42280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g42280.1 sequence type=predicted peptide gene model=Glyma19g42280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSNSNITSCDSWSFTTENNNNGEDAAATVKQQLEMLGQLYSPNSNTSTTTNNSNGGSNADSQPPAKKKRNLPGNPDPSAEVIALSPNTLVATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGDKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFVTHRAFCDALSEENNKCNEVPKMHGSNLQPPIIPNIVASLPIINANNHKNPFSLPHDLMTTIPAKPFNNMAAAFTRSLSSTSSPSQLSSNSPNINMLVENGLLSPHMSATALLQKAAQMGATVNSNNNSMMSSDEKSFIVTSMAPPSYGIMNHNMHNGQQDLSQYNFNANGMVDGGSNNGMGMGGLDMFNAILDQSKALSKIIEQNNRNSTYNGVLHAMNNGKSSDPIEGGGTKGSEAVNHVMTLDLLGIGGGGGDGNFYGGDQQSEIAAGDGIWRNWSNKNAGLESFSATNSTM*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
