Glyma19g42260 - SoyBase

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Report for Sequence Feature Glyma19g42260

Feature Type:	gene_model
Chromosome:	Gm19
Start:	48275515
stop:	48280479
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g42260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27650	AT	Annotation by Michelle Graham. TAIR10: Tudor/PWWP/MBT superfamily protein \| chr5:9785511-9789094 FORWARD LENGTH=1072	SoyBase	E_val: 1.00E-104	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR10688	Panther	DNA (CYTOSINE-5-)-METHYLTRANSFERASE 3 ALPHA	JGI		ISS
PF00855	PFAM	PWWP domain	JGI		ISS
UniRef100_A2Q337	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA (Cytosine-5)-methyltransferase 3A n=1 Tax=Medicago truncatula RepID=A2Q337_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E8BD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E8BD related cluster n=1 Tax=unknown RepID=UPI000233E8BD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g42260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g42260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g234300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g42260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g42260

Limit To All Plant Sequences

>Glyma19g42260.2   sequence type=CDS   gene model=Glyma19g42260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGAATTGCACTCTCATGACAATGCCGCGGTTGCTACTGATTCCAAGCCGGAGGTTTCTTCGACGGAAGAATTTAGGGTTAGTGTTTGCTCCGACGCTAACACATCATCATCCACCGTCGATACCGATAAGTTTCACGGTTTCGATAGCAAATCGCTGTTACCGGAATTTGACGAGTACGTGGCTGCTGAGAGACACGTGTCGCAGGATCTAGGGTTTGAGTTCGAGGTCGGTGACATGGTGTGGGGGAAGGTGAAGTCTCACCCGTGGTGGCCCGGGCACCTATACAACGAAGCGTTCGCGTCCCCTTCGGTGCGTCGCTCGAAGCATGAGGGCCACGTGTTGGTGGCATTCTTCGGCGATAGCAGCTACGGCTGGTTCGAACCGGAGGAGCTTATTCCGTTCGACGCGAATTTCGCGGAGAAATCGCAGCAGACGAATTCTAGGACGTTTCTTAGGGCAGTGGAGGAGGCGGTTGATGAGGCCTGCAGGAGGCGTTGGCTTGGATTGGCTTGTAGGTGTAGAAACCCTGAAAATTTTAGTGCCACCGATGTTGAAGGGTATTTTTGTGTTGATGTGGAGGATTATGAGCCAGGAGGGTTGTATTCTGATGGCCAGATTCGAAAGGCGAGGGATAGTTTCAAACCGAGTGAGACTCTTGCTTTCGTGAAGCAATTGGCGATTGCTCCGCATGATGATGACCAAGGAAGCATTGGATTCAGTAACAATAAGGCTACCCTTTCCGCTTATCGGAAGGCCGTGTTTGAGCAGTTTGATGAGACTTATGCCCAGGCTTTTGGGGTCCAGCCGATGCACGCTACTCGTCCTCAGAGTAATCCACTCGATCAGCCTGGGATTGTGAGGCACCCTCCTAGAGCTCCTTTGAGTGGTCCACTGGTGATTGCTGAAGCTTTGGGTGGTGGGAAGAGCACTACCAAATCTGTTAAAGTTAAGGAGGCTTTGAAGAAGGATAGATACCTTCTTAAGCGGAGAGATGATCCTAATAACTCTGTCCAATTAGCATACAAGGAGGACAAATCTGATGCAGCGGACCGTTATGTATTTCAGAAGAGGGCTCCAGCTGTGCCTGTGGCACCTCATAATTTAGAAAAGCAAGCAGACACAGAATTTTTTAGTCATGACGGTGCTGCTTCAATTTCAGATGCTAAAGAAGATTTAATAGGTCAGGTTCAAGCAGATGACTGTGATCTTACATCTCATGCCATTTCCTCAGATGTGAAGCCCCATCTTGACAAGGGGAAGGAGCCTTCTGAAGAAGTGATCCATAGCTTTGAATGGGATAATGCTTCAAGTAAAAGCATTCTAAGCATAGATGATGAGATGTCTCAACCATCACATCTGGAGAATCAAGATTCTGTTGATGTTAAACATGACGGGAATGCAAAATTATCGGGACCATGTGAAGATTTTAAGCAAATAGAGCAGGGACTTCTGACTATTGCTAATGGAGTAAATGACATGCATCAAGTTAAGAGCGAAAATAATGTATATGGTTCGCCAGTTGAAGCAAAACATCACAAAATTAGTGCAGTGAAGAAGAAAAAAGGTCTTAAGAGACCCGCAGATGAGTTGAACTCTGAGACTTCTGCTGTTGGGGAGGAAAAGAAGAAAAAGAAAAAGAATTTAAATTTACAACCTACTTTAGGCTCTCAGGATAAACATTCTACCTTTGGGAAAATGATACACCTTTCTGGAAAATCAACAGAAAATGCTGTCTCAAGTGGTTTGGCTCCAAGAGAGGATTTTCCTGCAGAACAAGGGGAGGTGGATGTTAATGCCCGTAATTTGCTGCCCATGGATACCACAGGAAATGCTAATTTTGAATTGGTGCAACTTTTGGGAGATTTACAGGCCCTTGCTTTAAATCCTTTTCATGGTATTGAAAGAAAGATCCCTTCAGCTGTTCAGAAGTTCTTTCTGCGATTCAGGTCTCTTGTTTATCAAAAAAGCTTGTTTGTATCTCCACCAACTGAGAATGAAGCTCCTGATGTTCGTGTCACTAAACCTCCTTCCAGTGTCGGGATATCTGACAGTCCTGATGAGTATGTCAAAGCTTCACCGGTTGTAAAACCTTTGAAACATATTGTTTGGCCTGATGATCCTACAAAAGCTGGGCGGAAAAGGGCCCCCTCTGATAGGCAAGAGGAAATCGCTGCTAAGAGGTTGAAGAAAATCAAGGATATAAAGGCACTAGCTTCAGAAAAAGCAGTGACCAATCAGAAAACTTCTGAAGCCTGGCAGGAAGATGGAAAAGAATCCATGTCCCAGGCTCCATCCAAGTTAGTGAAACTAGAGTCGAACAAGAAAGTGGACTGTCCAGCTAAGGCAGTTGAGCCCACCATATTAATGATTAAATTTCCTCCTGAAACATCACTTCCATCTATTGCAGAGCTGAAGGCAAGGTTTGCTCGCTTTGGTCCAATGGATCAATCAGGTTTCCGTGTATTTTGGAATTCATCAACTTGCCGGGTTGTTTTCTTGCACAAGGTTGATGCACAGGCTGCCTATAAATATTCTGTAGGAAGTCAATCCTTATTTGGCAGTGTGGGTGTGAGGTTTTTTCTTCGAGAATTTGGGGATTCTGCACCTGAAGTCTCTGAAGCTGCCAAGGCTAGGGCGGATGATGGTGCCAACGAAACACCCCGGGTCAAGGATCCTGCAGGGATTCACCGCCAGACACTGGTATCATCACAGCAACCTCTTCTTCAACCGATCCAGCTCAAGTCCTGCCTGAAGAAATCTACAGGTGATGACTCGGGTCAGGTTACGGGTAATGGAAGTAGTAGTAAAGGAAACTCTCGTGTAAAATTCATGTTGGGTGGGGAAGAAAGTAGTAGGGGAGACCAATTAACGTCGGGTAGTAGAAACAACTTCAACAATGCTAGTTTTGCTGATGCTGGCGCACCTCCTGTTGCAACGGATTTTAATAGTAAGAACGTTCAGAAGGTCACTTTACAACCCCCGTTGCCGCCAATTCTTCCCCTTCCTACCCAGTTTATAAAATCCCCACAACATAATTTGCGTAATTCTGAATTGGCAATGGCACCCCGAAACAGCCCCAATTTTATTAACACCATTGCATCAGCAGCTACTGCAACCACAGTTGATATATCACAGCCAATGATAAACCTTTTGACCAGGTGCAGCGATATTGTGACTAACCTGACGGGTTTATTAGGCTATGTGCCTTACCATCCACTTTGA

Predicted protein sequences of Glyma19g42260

Limit To All Plant Sequences

>Glyma19g42260.2   sequence type=predicted peptide   gene model=Glyma19g42260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTELHSHDNAAVATDSKPEVSSTEEFRVSVCSDANTSSSTVDTDKFHGFDSKSLLPEFDEYVAAERHVSQDLGFEFEVGDMVWGKVKSHPWWPGHLYNEAFASPSVRRSKHEGHVLVAFFGDSSYGWFEPEELIPFDANFAEKSQQTNSRTFLRAVEEAVDEACRRRWLGLACRCRNPENFSATDVEGYFCVDVEDYEPGGLYSDGQIRKARDSFKPSETLAFVKQLAIAPHDDDQGSIGFSNNKATLSAYRKAVFEQFDETYAQAFGVQPMHATRPQSNPLDQPGIVRHPPRAPLSGPLVIAEALGGGKSTTKSVKVKEALKKDRYLLKRRDDPNNSVQLAYKEDKSDAADRYVFQKRAPAVPVAPHNLEKQADTEFFSHDGAASISDAKEDLIGQVQADDCDLTSHAISSDVKPHLDKGKEPSEEVIHSFEWDNASSKSILSIDDEMSQPSHLENQDSVDVKHDGNAKLSGPCEDFKQIEQGLLTIANGVNDMHQVKSENNVYGSPVEAKHHKISAVKKKKGLKRPADELNSETSAVGEEKKKKKKNLNLQPTLGSQDKHSTFGKMIHLSGKSTENAVSSGLAPREDFPAEQGEVDVNARNLLPMDTTGNANFELVQLLGDLQALALNPFHGIERKIPSAVQKFFLRFRSLVYQKSLFVSPPTENEAPDVRVTKPPSSVGISDSPDEYVKASPVVKPLKHIVWPDDPTKAGRKRAPSDRQEEIAAKRLKKIKDIKALASEKAVTNQKTSEAWQEDGKESMSQAPSKLVKLESNKKVDCPAKAVEPTILMIKFPPETSLPSIAELKARFARFGPMDQSGFRVFWNSSTCRVVFLHKVDAQAAYKYSVGSQSLFGSVGVRFFLREFGDSAPEVSEAAKARADDGANETPRVKDPAGIHRQTLVSSQQPLLQPIQLKSCLKKSTGDDSGQVTGNGSSSKGNSRVKFMLGGEESSRGDQLTSGSRNNFNNASFADAGAPPVATDFNSKNVQKVTLQPPLPPILPLPTQFIKSPQHNLRNSELAMAPRNSPNFINTIASAATATTVDISQPMINLLTRCSDIVTNLTGLLGYVPYHPL*

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