SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G27660 | AT | Annotation by Michelle Graham. TAIR10: Trypsin family protein with PDZ domain | chr5:9789835-9792235 REVERSE LENGTH=428 | SoyBase | E_val: 4.00E-164 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004252 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity | SoyBase | N/A | ISS |
| GO:0008236 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity | SoyBase | N/A | ISS |
| KOG1320 | KOG | Serine protease | JGI | ISS | |
| PTHR22939 | Panther | SERINE PROTEASE FAMILY S1C HTRA-RELATED | JGI | ISS | |
| PTHR22939:SF24 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00089 | PFAM | Trypsin | JGI | ISS | |
| UniRef100_A2Q336 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Medicago truncatula RepID=A2Q336_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NBY4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NBY4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g42250 not represented in the dataset |
Glyma19g42250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g234200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g42250.2 sequence type=transcript gene model=Glyma19g42250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTACTCTCTCTATGCATTGGCTATTTGTCCGATTGAATCGTTTGTAATGTCTCAATGGGAGATGGAATGTGTCGCAGAGACGATTTGGGCGTTTTGGAGCTGTGGGGACCGCGGCTTTTGGTTCTACTCTGTTGTGCTCTAATGACAGTGCTCGTTTTAGAGCTTCGGTTGCATTGCGGGTCCCTGAGCCATTGCAGAATTCCCTATGGTTGACATGTCCTGTGTTGCGTGATTTGTCTCCTCAACCTTCACCTTTTCCCGACCAATTTGGAATGCGTCTGCTCTATTCTTATAGAGTTAGTCCGGTTCCATCGTCTGGTGTATCTAAGGAAGCTTCTGCGGCTGCTGGTGATGAGTCTAAGCCACATGATTGTTTTGGCAAAGATACTATTGCAAATGCAGCTGCTAAAGTTGGTCCTGCTGTTGTTAATATTGCAATTCCACAAGATTTTTTTGGTATTACTAGCGGAAAGAGTATAGGTTCTGGAACAATCATCAACAAGGATGGAACAATCCTGACAGCTGCTCATGTTGTGGTTGATTTTCTAGGCACTAGAGGTTCGTCCAAAGGGAAGATTGAAGTTACTTTGCAAGATGGAAGAACATTTGAGGGGAAAGTCATAAATGCTGACCTGCATTCAGATGTTGCTATTTTGAAGATTAATTCTGAAACCCCACTGCCAGAAGCTAAATTTGGTTCGTCAAGTAGGCTACGTCCAGGGGATTGGGTAATAGCCATGGGCTGTCCACTTTCTCTTCAGAATACTGTCACTGCTGGAATTGTAAGTTGTGTTGACCGCAAAAGTAGTGATCTGGGTTTTAGTGGCATGCCAAGAGAGTATTTACAAACCGATTGTGCAATTAATATGGGAAATTCTGGAGGGCCTCTTGTCAACATGGATGGAGAAATTATTGGGGTTAACATCATGAAAGTGGCCGCTGCGGATGGGTTGAGTTTTTCTGTGCCAATTGATTCCGTGTGTAAAATTTTAGAGCATTTCAAGAAAAGTGGGAGAGTAATACGGCCTTGGCTTGGGCTAAAGATGCTTGATCTTAATGAGATGATTATTGCGCAGCTTAAAAAGCAAGATCCTTCGTTCCCTAATGTCAACAAAGGCATTCTTGTACCAATGGTAACTCCCAGGTCCCCTGGAGAGCGTGCAGGTTTCTTCCCTGGTGACGTTGTTATTGAATTCGATGGGAGACCTGTTGAAAGATTAAAGGAGGTTATTGAAGTATTAGGGGACAAAGTTGGGGTGCCCATTAAGGTACTAGTAAAAAGAGCGGGTGATAAATTGGTGACTTTGACTGTGATCCCGGAGGAAGCCAATCTCGATGTGTAAAGGACTGGTGATGCTTTTTTAATCTGTGAACTGTGATGCGTTTATTTCTGGGTTGCTGATGAGCTCAATTTTGATTACAACAAATGCAAGTGACAATGTTGAAATGGAGACCATTTTTGTGATTTGATTATCTCAGGGTTTGTTTGTTTCAAAGTTGGATTCTTGCCATTATTTTCCCTATTTTACCAAAATTCAAACCATTCAATATTCAATTAGCACCCACACGTTTAAGTGCGGAATCAATGGAAAAGGAAAATTAAATCCTTGATGATCTTACGTTCTGTTGAAAACAATTACTTTTATTATGTCAGGGGTGCATAAAGGATTAATGTCAGTTGTTGAGGTAAGGATTATTAGGGAAGA
>Glyma19g42250.1 sequence type=CDS gene model=Glyma19g42250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTGTTGTTTCCTGAGACGATTTGGGCGTTTTGGAGCTGTGGGGACCGCGGCTTTTGGTTCTACTCTGTTGTGCTCTAATGACAGTGCTCGTTTTAGAGCTTCGGTTGCATTGCGGGTCCCTGAGCCATTGCAGAATTCCCTATGGTTGACATGTCCTGTGTTGCGTGATTTGTCTCCTCAACCTTCACCTTTTCCCGACCAATTTGGAATGCGTCTGCTCTATTCTTATAGAGTTAGTCCGGTTCCATCGTCTGGTGTATCTAAGGAAGCTTCTGCGGCTGCTGGTGATGAGTCTAAGCCACATGATTGTTTTGGCAAAGATACTATTGCAAATGCAGCTGCTAAAGTTGGTCCTGCTGTTGTTAATATTGCAATTCCACAAGATTTTTTTGGTATTACTAGCGGAAAGAGTATAGGTTCTGGAACAATCATCAACAAGGATGGAACAATCCTGACAGCTGCTCATGTTGTGGTTGATTTTCTAGGCACTAGAGGTTCGTCCAAAGGGAAGATTGAAGTTACTTTGCAAGATGGAAGAACATTTGAGGGGAAAGTCATAAATGCTGACCTGCATTCAGATGTTGCTATTTTGAAGATTAATTCTGAAACCCCACTGCCAGAAGCTAAATTTGGTTCGTCAAGTAGGCTACGTCCAGGGGATTGGGTAATAGCCATGGGCTGTCCACTTTCTCTTCAGAATACTGTCACTGCTGGAATTGTAAGTTGTGTTGACCGCAAAAGTAGTGATCTGGGTTTTAGTGGCATGCCAAGAGAGTATTTACAAACCGATTGTGCAATTAATATGGGAAATTCTGGAGGGCCTCTTGTCAACATGGATGGAGAAATTATTGGGGTTAACATCATGAAAGTGGCCGCTGCGGATGGGTTGAGTTTTTCTGTGCCAATTGATTCCGTGTGTAAAATTTTAGAGCATTTCAAGAAAAGTGGGAGAGTAATACGGCCTTGGCTTGGGCTAAAGATGCTTGATCTTAATGAGATGATTATTGCGCAGCTTAAAAAGCAAGATCCTTCGTTCCCTAATGTCAACAAAGGCATTCTTGTACCAATGGTAACTCCCAGGTCCCCTGGAGAGCGTGCAGGTTTCTTCCCTGGTGACGTTGTTATTGAATTCGATGGGAGACCTGTTGAAAGATTAAAGGAGGTTATTGAAGTATTAGGGGACAAAGTTGGGGTGCCCATTAAGGTACTAGTAAAAAGAGCGGGTGATAAATTGGTGACTTTGACTGTGATCCCGGAGGAAGCCAATCTCGATGTGTAA >Glyma19g42250.2 sequence type=CDS gene model=Glyma19g42250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTCTGCTCTATTCTTATAGAGTTAGTCCGGTTCCATCGTCTGGTGTATCTAAGGAAGCTTCTGCGGCTGCTGGTGATGAGTCTAAGCCACATGATTGTTTTGGCAAAGATACTATTGCAAATGCAGCTGCTAAAGTTGGTCCTGCTGTTGTTAATATTGCAATTCCACAAGATTTTTTTGGTATTACTAGCGGAAAGAGTATAGGTTCTGGAACAATCATCAACAAGGATGGAACAATCCTGACAGCTGCTCATGTTGTGGTTGATTTTCTAGGCACTAGAGGTTCGTCCAAAGGGAAGATTGAAGTTACTTTGCAAGATGGAAGAACATTTGAGGGGAAAGTCATAAATGCTGACCTGCATTCAGATGTTGCTATTTTGAAGATTAATTCTGAAACCCCACTGCCAGAAGCTAAATTTGGTTCGTCAAGTAGGCTACGTCCAGGGGATTGGGTAATAGCCATGGGCTGTCCACTTTCTCTTCAGAATACTGTCACTGCTGGAATTGTAAGTTGTGTTGACCGCAAAAGTAGTGATCTGGGTTTTAGTGGCATGCCAAGAGAGTATTTACAAACCGATTGTGCAATTAATATGGGAAATTCTGGAGGGCCTCTTGTCAACATGGATGGAGAAATTATTGGGGTTAACATCATGAAAGTGGCCGCTGCGGATGGGTTGAGTTTTTCTGTGCCAATTGATTCCGTGTGTAAAATTTTAGAGCATTTCAAGAAAAGTGGGAGAGTAATACGGCCTTGGCTTGGGCTAAAGATGCTTGATCTTAATGAGATGATTATTGCGCAGCTTAAAAAGCAAGATCCTTCGTTCCCTAATGTCAACAAAGGCATTCTTGTACCAATGGTAACTCCCAGGTCCCCTGGAGAGCGTGCAGGTTTCTTCCCTGGTGACGTTGTTATTGAATTCGATGGGAGACCTGTTGAAAGATTAAAGGAGGTTATTGAAGTATTAGGGGACAAAGTTGGGGTGCCCATTAAGGTACTAGTAAAAAGAGCGGGTGATAAATTGGTGACTTTGACTGTGATCCCGGAGGAAGCCAATCTCGATGTGTAA
>Glyma19g42250.1 sequence type=predicted peptide gene model=Glyma19g42250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSCCFLRRFGRFGAVGTAAFGSTLLCSNDSARFRASVALRVPEPLQNSLWLTCPVLRDLSPQPSPFPDQFGMRLLYSYRVSPVPSSGVSKEASAAAGDESKPHDCFGKDTIANAAAKVGPAVVNIAIPQDFFGITSGKSIGSGTIINKDGTILTAAHVVVDFLGTRGSSKGKIEVTLQDGRTFEGKVINADLHSDVAILKINSETPLPEAKFGSSSRLRPGDWVIAMGCPLSLQNTVTAGIVSCVDRKSSDLGFSGMPREYLQTDCAINMGNSGGPLVNMDGEIIGVNIMKVAAADGLSFSVPIDSVCKILEHFKKSGRVIRPWLGLKMLDLNEMIIAQLKKQDPSFPNVNKGILVPMVTPRSPGERAGFFPGDVVIEFDGRPVERLKEVIEVLGDKVGVPIKVLVKRAGDKLVTLTVIPEEANLDV* >Glyma19g42250.2 sequence type=predicted peptide gene model=Glyma19g42250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLLYSYRVSPVPSSGVSKEASAAAGDESKPHDCFGKDTIANAAAKVGPAVVNIAIPQDFFGITSGKSIGSGTIINKDGTILTAAHVVVDFLGTRGSSKGKIEVTLQDGRTFEGKVINADLHSDVAILKINSETPLPEAKFGSSSRLRPGDWVIAMGCPLSLQNTVTAGIVSCVDRKSSDLGFSGMPREYLQTDCAINMGNSGGPLVNMDGEIIGVNIMKVAAADGLSFSVPIDSVCKILEHFKKSGRVIRPWLGLKMLDLNEMIIAQLKKQDPSFPNVNKGILVPMVTPRSPGERAGFFPGDVVIEFDGRPVERLKEVIEVLGDKVGVPIKVLVKRAGDKLVTLTVIPEEANLDV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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