Glyma19g42240 - SoyBase

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Report for Sequence Feature Glyma19g42240

Feature Type:	gene_model
Chromosome:	Gm19
Start:	48260948
stop:	48262037
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g42240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27670	AT	Annotation by Michelle Graham. TAIR10: histone H2A 7 \| chr5:9792807-9793365 REVERSE LENGTH=150	SoyBase	E_val: 2.00E-73	ISS
GO:0006334	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleosome assembly	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0000786	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleosome	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG1756	KOG	Histone 2A	JGI		ISS
PTHR23430	Panther	HISTONE H2A	JGI		ISS
PF00125	PFAM	Core histone H2A/H2B/H3/H4	JGI		ISS
UniRef100_Q94F49	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable histone H2A.5 n=2 Tax=Arabidopsis thaliana RepID=H2A5_ARATH	SoyBase	E_val: 8.00E-71	ISS
UniRef100_UPI0001B63DA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001B63DA4 related cluster n=1 Tax=unknown RepID=UPI0001B63DA4	SoyBase	E_val: 8.00E-95	ISS

Expression Patterns of Glyma19g42240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g42240 not represented in the dataset	Glyma19g42240 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g42240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g234100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g42240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g42240

Limit To All Plant Sequences

>Glyma19g42240.2   sequence type=CDS   gene model=Glyma19g42240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTATCCCACGTTCCCTCTCATTCGGCTTACACTGCTACAAAAACATTGAAAGAAATAGAAAAAGCAAAACTGGTTTCTCGCATTTCCTCCGAAACAAACCGTTTCGCTCGTTTCTCGGATCTGCAATGGAAGCCCCACCCAAAGGCGCTGCTGGAAGAAGAGGTGACAGGAAGAAGTCCGTTTCCAAATCCATCAAAGCTGGCCTCCAATTCCCCGTCAGCCGCGTCGCCAGGTACTTGAAGAAAGGCCGTTACTCTCGCCGCCTTGGCACCGGCGCTCCCATTTATCTCGCCGCCGTTCTCGAATATCTCGCCGCAGAAGTGTTGGAGCTGGCCGGGAACGCTGCACGTGACAACAAGAAGAATAGGATTAACCCTAGGCACGTGTTGCTGGCGGTGAGGAATGATGATGAGCTGGGGAAACTGCTTCAAGGTGTGACTATTGCTAGCGGTGGAGTGTTGCCGAACATTAACCCGGTTTTGTTGCCTAAGAAGAGTACCACTGCGCCTTCTGAGAAGTCCTCTACTCCTAAGTCCCCCAAATCTCCTAAGAAGAAATAG

Predicted protein sequences of Glyma19g42240

Limit To All Plant Sequences

>Glyma19g42240.2   sequence type=predicted peptide   gene model=Glyma19g42240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FIPRSLSFGLHCYKNIERNRKSKTGFSHFLRNKPFRSFLGSAMEAPPKGAAGRRGDRKKSVSKSIKAGLQFPVSRVARYLKKGRYSRRLGTGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLLPKKSTTAPSEKSSTPKSPKSPKKK*

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