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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09130 | AT | Annotation by Michelle Graham. TAIR10: ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr1:2940063-2942217 REVERSE LENGTH=330 | SoyBase | E_val: 7.00E-178 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009532 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0004252 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity | SoyBase | N/A | ISS |
| KOG0840 | KOG | ATP-dependent Clp protease, proteolytic subunit | JGI | ISS | |
| PTHR10381 | Panther | PROTEASE FAMILY S14 CLPP PROTEASE | JGI | ISS | |
| PTHR10381:SF3 | Panther | gb def: atp-dependent clp protease proteolytic subunit homolog [chlorarachnion ccmp621] | JGI | ISS | |
| PF00574 | PFAM | Clp protease | JGI | ISS | |
| UniRef100_I1NBX9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent Clp protease proteolytic subunit n=1 Tax=Glycine max RepID=I1NBX9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NBX9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: ATP-dependent Clp protease proteolytic subunit n=1 Tax=Glycine max RepID=I1NBX9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g42180 not represented in the dataset |
Glyma19g42180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g39570 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g233600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g42180.2 sequence type=transcript gene model=Glyma19g42180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATAAAGCAATAAAATATATCGAAACAGCTGTATATTAAATATTAAACTAGAGATTAGAGAAACTTGGCAGTTGATATTTGGTGGCTCATCTGTTTCTGGTTGAAGTGTTTGTGCAGCATGGCCATGGTAGGCGGAACCATGATGGCTGCGTATTTGCGTGTATCCATGCCCACTTCCCCACAGTCCCCCACCACTACGAGGAGGAGATGCAGAAATCTGAAAACTTCTTGCTCCGTTAACAGACCCAAAATTCCAATGCCCCCTCTCAACCCTAAAGACCCCTTTCTCTCCAAGCTCGCTTCCGTCGCTGCTTCTTCCCCTGAAACGCTCCTCAACACTCCCAAAAACTCCGACACCCTTCCTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAGTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCTGACCTGCCTTCGCTGCTTCTCCATGGTAGAATTGTTTACATTGGCATGCCTTTGGTGCCAGCTGTCACGGAGCTTGTCGTTGCAGAATTGATGTACTTGCAGTATATGGATCCTAAAGAGCCAATCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAGATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAGCCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTGATGTTCTTATTCGTGCAAAGGAGGTGATAATTAACAGGGACAATCTGGTTAAACTACTGGCCAAACACACGGGAAATTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCATATTATATGGATGCAACAAGGGCTAAGGAATTTGGGGTCATTGATAGAATTCTTTGGCGTGGTCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGATGACTGGGACAAGGGTGCTGGTATCAAAATTGTAGATGGATTCTAGTTCCTCTTTTGTGGATACGTTTCTTGTTTCTTGTCAATGTCACATGTTTCGGTAGGATTTGTTTTCATGGTCTACGGGTCCAGAAATGTTCCACAGCTATTCTTCATAGAACACTGACCCCGTAGTTACCCAAGTGCCCAGGAGACAGAGGAGTTGATGGACGTTTTACTAAGAATGTCCCGAAAAAAGAAAAGAAAAGAAAAAGAAATAGTGATTGTTCATCCATGTAATCATATACAGTGATTGGTTCTGACTATTAGTTAGTCATTGGCTGCCTACCCGAATTTTACACAGGGACTGTGATTGGCGTTTATCATTACACAATTAAATAGAGTACATAATTTGTAATCTTTTTGTTTCTATATCATTCGATCAGAGATGAACCAAAAGAAACATCTTTGCAAATCACGTACCACTCTTCTCTTTCAATTTAATTTAATTGTAGCGTAGCATTTCTTTACTGTGTTTGAAATC
>Glyma19g42180.1 sequence type=CDS gene model=Glyma19g42180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCATGGTAGGCGGAACCATGATGGCTGCGTATTTGCGTGTATCCATGCCCACTTCCCCACAGTCCCCCACCACTACGAGGAGGAGATGCAGAAATCTGAAAACTTCTTGCTCCGTTAACAGACCCAAAATTCCAATGCCCCCTCTCAACCCTAAAGACCCCTTTCTCTCCAAGCTCGCTTCCGTCGCTGCTTCTTCCCCTGAAACGCTCCTCAACACTCCCAAAAACTCCGACACCCTTCCTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAGTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCTGACCTGCCTTCGCTGCTTCTCCATGGTAGAATTGTTTACATTGGCATGCCTTTGGTGCCAGCTGTCACGGAGCTTGTCGTTGCAGAATTGATGTACTTGCAGTATATGGATCCTAAAGAGCCAATCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAGATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAGCCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTGATGTTCTTATTCGTGCAAAGGAGGTGATAATTAACAGGGACAATCTGGTTAAACTACTGGCCAAACACACGGGAAATTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCATATTATATGGATGCAACAAGGGCTAAGGAATTTGGGGTCATTGATAGAATTCTTTGGCGTGGTCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGATGACTGGGACAAGGGTGCTGGTATCAAAATTGTAGATGGATTCTAG >Glyma19g42180.2 sequence type=CDS gene model=Glyma19g42180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCATGGTAGGCGGAACCATGATGGCTGCGTATTTGCGTGTATCCATGCCCACTTCCCCACAGTCCCCCACCACTACGAGGAGGAGATGCAGAAATCTGAAAACTTCTTGCTCCGTTAACAGACCCAAAATTCCAATGCCCCCTCTCAACCCTAAAGACCCCTTTCTCTCCAAGCTCGCTTCCGTCGCTGCTTCTTCCCCTGAAACGCTCCTCAACACTCCCAAAAACTCCGACACCCTTCCTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAGTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCTGACCTGCCTTCGCTGCTTCTCCATGGTAGAATTGTTTACATTGGCATGCCTTTGGTGCCAGCTGTCACGGAGCTTGTCGTTGCAGAATTGATGTACTTGCAGTATATGGATCCTAAAGAGCCAATCTATATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGGTAGGCATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGAAAAATGAGATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAGCCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTGATGTTCTTATTCGTGCAAAGGAGGTGATAATTAACAGGGACAATCTGGTTAAACTACTGGCCAAACACACGGGAAATTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCATATTATATGGATGCAACAAGGGCTAAGGAATTTGGGGTCATTGATAGAATTCTTTGGCGTGGTCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGATGACTGGGACAAGGGTGCTGGTATCAAAATTGTAGATGGATTCTAG
>Glyma19g42180.1 sequence type=predicted peptide gene model=Glyma19g42180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMVGGTMMAAYLRVSMPTSPQSPTTTRRRCRNLKTSCSVNRPKIPMPPLNPKDPFLSKLASVAASSPETLLNTPKNSDTLPYLDIFDSPKLMATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDAMMQLKNEIHTVAVGSAIGQACLLLSAGSPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRDNLVKLLAKHTGNSEETVANVMKRPYYMDATRAKEFGVIDRILWRGQEKVMADVASPDDWDKGAGIKIVDGF* >Glyma19g42180.2 sequence type=predicted peptide gene model=Glyma19g42180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMVGGTMMAAYLRVSMPTSPQSPTTTRRRCRNLKTSCSVNRPKIPMPPLNPKDPFLSKLASVAASSPETLLNTPKNSDTLPYLDIFDSPKLMATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQYMDPKEPIYIYINSTGTTRDDGETVGMETEGFAIYDAMMQLKNEIHTVAVGSAIGQACLLLSAGSPGKRFMMPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRDNLVKLLAKHTGNSEETVANVMKRPYYMDATRAKEFGVIDRILWRGQEKVMADVASPDDWDKGAGIKIVDGF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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