Glyma19g42160 - SoyBase

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Report for Sequence Feature Glyma19g42160

Feature Type:	gene_model
Chromosome:	Gm19
Start:	48199680
stop:	48203728
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g42160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05510	AT	Annotation by Michelle Graham. TAIR10: Phospholipid/glycerol acyltransferase family protein \| chr3:1595576-1598074 FORWARD LENGTH=448	SoyBase	E_val: 0	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
KOG2847	KOG	Phosphate acyltransferase	JGI		ISS
PTHR12497	Panther	TAZ PROTEIN (TAFAZZIN)	JGI		ISS
PF01553	PFAM	Acyltransferase	JGI		ISS
UniRef100_G7KXI7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tafazzin n=1 Tax=Medicago truncatula RepID=G7KXI7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NBX5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBX5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g42160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g42160

Paralog	Evidence	Comments
Glyma03g39540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g42160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g233400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g42160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g42160

Limit To All Plant Sequences

>Glyma19g42160.1   sequence type=CDS   gene model=Glyma19g42160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCCTTCTCGATCGCGGTGATGTTTGGAAGAGCAAGGCGCGATCCTTGCAGCTACAGTTCCGGGACCGTTTCCGGGTCGCCGTCGACCACCATTGGCGCCGCCGACACCACCACACCTTTATCCCCTCTGCCGATGGCTACTTCTCCTCCACCATTCAACGCTGCCTCAGCCGATTTCGTGATTTCCGAAGGGATTCATTGCCTTCTTCCACCTCTTTCTATCGTAAACGAGTGATTAAGGATTTCAGTTCTGAGGAAGATTCAGCTCTTGTTCGTACGATGCAAGCTGTTGCGGTTCCTGTTCTTGGAAATGTCTGTCACGTGTTTATGAACGGATTAAACCAGGTGCAGGTGTATGGTTTAGAAAAACTGCACTCCGCGTTGCTGCATAGACCTAAGGGCAAACCTCTTCTTACGGTCAGCAATCATGTTGCTTCCATGGATGATCCGCTTGTTATCGCTTCGCTGCTTCCTCCGAGTGTTCTCTTGGATGCTAGGAATCTCAGATGGACTCTTTGTGCCACTGATAGGTGTTTTAAAAACCCCGTGACTTCTGCATTCTTTCGATCAGTCAAGGTCTTGCCAGTTTCTCGGGGTGACGGGATTTATCAGGAGGGAATGGACTTGGCCCTTTCAAAATTGAACCATGGTGGTTGGGTCCACATATTCCCAGAAGGTAGTCGCTCCCGGGATGGTGGAAAAACAATGGGCTCTTCCAAGAGAGGTGTTGGGAGGTTAGTCCTGGATGGAGATAGCATGCCCCTTGTTGTCCCATTTGTACATACAGGGATGCAGGAGATTATGCCTGTAGGTGCTAACTTTCCCAGAATAGGCAAGATGGTTACAGTGCTCATTGGTGATCCGATAAATTTTGACGATATACTTGAATTTGACATGGAGAAGGGCTCGAATGTGCCCAGAAGACGACTATTTGATGCAGTAGCATCTAGAATTGGTGATAGGTTGCATGAGATGAAGGTCCAGGTTGACACTATCGCCATTGAACAAGAAATGCAGCTACAAGATAACTCCTCACACAGCACTGACCGAACATCTGAAATATTGCAGCAGGTTGATTGGGAATTATTTGGAATGGATAGCTTCATGTCTGTAGAAGATGATTCCAAGCAGAGACAAGAAACAGTTCTCCTCCGAAATGTTAGTGTTTCTCAGCATCATCAAAAATCTCATAGTGATCAGAGTTGGAGAGCTGGGTTCTCATACAGGATGCGTGATTATATTGATCAGATGGAGCTTGTGTCTTTTGCTGCGAGAGGTATATTTATGAATAATGAAACGAAGAACTCTGCTGGCCGTAGCAGAGAGATGGGCCCCTTAAAGGCATGGAAGCAGTTTTTGGAAGCTAATCTATTAAGGCAGTGGAATTACGTCCATTACTGA

Predicted protein sequences of Glyma19g42160

Limit To All Plant Sequences

>Glyma19g42160.1   sequence type=predicted peptide   gene model=Glyma19g42160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLLDRGDVWKSKARSLQLQFRDRFRVAVDHHWRRRHHHTFIPSADGYFSSTIQRCLSRFRDFRRDSLPSSTSFYRKRVIKDFSSEEDSALVRTMQAVAVPVLGNVCHVFMNGLNQVQVYGLEKLHSALLHRPKGKPLLTVSNHVASMDDPLVIASLLPPSVLLDARNLRWTLCATDRCFKNPVTSAFFRSVKVLPVSRGDGIYQEGMDLALSKLNHGGWVHIFPEGSRSRDGGKTMGSSKRGVGRLVLDGDSMPLVVPFVHTGMQEIMPVGANFPRIGKMVTVLIGDPINFDDILEFDMEKGSNVPRRRLFDAVASRIGDRLHEMKVQVDTIAIEQEMQLQDNSSHSTDRTSEILQQVDWELFGMDSFMSVEDDSKQRQETVLLRNVSVSQHHQKSHSDQSWRAGFSYRMRDYIDQMELVSFAARGIFMNNETKNSAGRSREMGPLKAWKQFLEANLLRQWNYVHY*

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