SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05545 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:1609436-1612133 FORWARD LENGTH=425 | SoyBase | E_val: 7.00E-106 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR22764 | Panther | RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). | JGI | ISS | |
| PTHR22764:SF26 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_B9RFB9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RFB9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NBW9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBW9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g42100 not represented in the dataset |
Glyma19g42100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g39490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g232800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g42100.1 sequence type=CDS gene model=Glyma19g42100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCTGGGAAACGATGACGATGACGGAGACACGCTCAAGTCCTTCGGTTCAGTGTGTTGTTCGATTTGCCTCGAGGCTGTTACCGATAACGGTGATCGATCCTGGGCCAAGCTTCAATGCGGACATCAATTTCATCTCGATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATTGTCGTAAGGTTGAAAAAGGTCAGTGGCTTTATGCTAATGGTTGTCGATCATATCCAGAATTTAGCATGGATGAATGGACACATGATGAGGATCTATATGATCTTAGCTACTCTGAAATGTCCTTTGGAGTTCACTGGTGCCCTTTTGGTAACTTGACCCGACTTCCTTCATCTTTCGAGGAAGGGGATTTTTCTTCAACTGCGTATCATGATGTACTGGGACAACATGCTATATTTGCTGAACATACGGCTGTATCATCTGCTAGTCATCCTTGCCCATATATTGCCTACTTTGGACCAATACATCCCTCCACCTCCAATTCTGGTGGAACTGTTTCCGAAGCTTCTAATTTCAACCACTGGAATGGTCCACCTGTACCTGGTGACATGCCAACCTCCTACACATTTCCTGCAGTGGATCTTCATTATCACAGTTGGGAACACAATTCCTCTCATTTCTCTTCTGCCAACAGCCGTCTAGGCACTGCAGAACAGGCCTCAGTATCACCTGGTAGTCAAAGGCCTGCCAGGGTTGGTTCAGAGGTCCCTAGATCCGGGTCTTTTATGCATCCCTTCCTTGTTGGTCACAGTTCTGCTGCTAGGGCTGGAAACTCTGTTGCATCTTCAATGATCCCTCCTTATCCAGGCAGCAATGCTCGGGCCCGTGATAGAGTCCAAGCTCTTCAAGCATATTATCAACCTCAGCAACCTCATAATTCTACCACAATACGGACACCTGTTGCTTCTAGCACTCGAAGATCCAGTAGTCATAGTGGGCCTGTTCAATTAGCACCAGTGGCCTCGCCACCAGACCAAAGTGCTGGCTTCGTATATATTCCATCAGGTTCTTCAGGACGCAATTTTCAGGAAGAAACCCATTTGCCAAGTCGATTCCATGCTTGGGAAAGAGAGCACTTGCCTTCATTGGCGTTAAACAATGTTGGTAGAGAATCAAGTTGGAGAGCATACCACCAGACTGCCAGTGTGTCAGACCCAAGTATCAGATCCAGCAGCTTTCGATTAAGACACGAATCCGACAGAATGCCTTCACAAAATCGGTGA
>Glyma19g42100.1 sequence type=predicted peptide gene model=Glyma19g42100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLGNDDDDGDTLKSFGSVCCSICLEAVTDNGDRSWAKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKVEKGQWLYANGCRSYPEFSMDEWTHDEDLYDLSYSEMSFGVHWCPFGNLTRLPSSFEEGDFSSTAYHDVLGQHAIFAEHTAVSSASHPCPYIAYFGPIHPSTSNSGGTVSEASNFNHWNGPPVPGDMPTSYTFPAVDLHYHSWEHNSSHFSSANSRLGTAEQASVSPGSQRPARVGSEVPRSGSFMHPFLVGHSSAARAGNSVASSMIPPYPGSNARARDRVQALQAYYQPQQPHNSTTIRTPVASSTRRSSSHSGPVQLAPVASPPDQSAGFVYIPSGSSGRNFQEETHLPSRFHAWEREHLPSLALNNVGRESSWRAYHQTASVSDPSIRSSSFRLRHESDRMPSQNR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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