Glyma19g42060 - SoyBase

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Report for Sequence Feature Glyma19g42060

Feature Type:	gene_model
Chromosome:	Gm19
Start:	48133383
stop:	48135359
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g42060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G56220	AT	Annotation by Michelle Graham. TAIR10: Dormancy/auxin associated family protein \| chr1:21043414-21044381 FORWARD LENGTH=109	SoyBase	E_val: 7.00E-42	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0032880	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05564	PFAM	Dormancy/auxin associated protein	JGI		ISS
UniRef100_G7KXK6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Drm3 n=1 Tax=Medicago truncatula RepID=G7KXK6_MEDTR	SoyBase	E_val: 6.00E-69	ISS
UniRef100_I1NBW3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBW3_SOYBN	SoyBase	E_val: 2.00E-87	ISS

Expression Patterns of Glyma19g42060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g42060

Paralog	Evidence	Comments
Glyma03g39450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g42060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g232400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g42060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g42060

Limit To All Plant Sequences

>Glyma19g42060.6   sequence type=transcript   gene model=Glyma19g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGCTCTGGCATCGTTAAATATGACCTCTGTGGGGCGTAGTTGTATCTCTTACTCCGAGATCTGGTCATCGTTGGGATCTCCATACGCCGGATCTGCTAAAATACGCTTGATCCATATGGGCCTCCTCGACCACTTGTGGGACGACACCGTCGCCGGCCCAAGGCCGGAAAACGGTCTCGGCAAGCTCCGAAAACACCACACCTTCACTTTCCGACCTAGCTCCGGCAAGGAAACGGAGGGCGGGAGCGTGAGATCGTACGGAGACGAATCGTCGGAGGAAGCGACGAGAGTGACGCGTAGTATCATGATCGTGAAACCGCCCGGGTACCAGAGTGGATCGCCTCCGGTTTCTCCCGCCGGTTCTACTACTCCGATTTCTCCGTTTTCCGGAGGAAAAGATTCGTTTCGGTTTCGAAGAAGGTCGGCATCAGATGCGTACGAGAAGAGAGGGCAGAACAGATCAGGCCCTTCTTCTCCTTTCGATGTGTGAGAAATGAGAGTCGCATTTTCTCGTACCCGAAAGCTGAGGATGTAGTCTTTTGGCCTATGCTGTATTCATTTTTGTTTAGATCTCCGTTTGCATGTATGAATGTATGTAAGGAATGAGTTGAGGTTAAGGTTGTGCCACAGTTCTGCCAGTTCACGCGAGGTAGCTTTTTGGTTTAGCTTCTTTAAGTCTTTACTTAGGTGAGCTGCGTAGTGGCTGGCAAATTGTAAGTAAGAAAGTGTAAGGGTAGAGTAGCGGTGTATCTTATTATTATGTAATGTATATTTATAATTAATAAGCCATTCTGCGTTTGTTGGTAGTGTTCATTTCTCCTCATAAATTAAGTTTTAGCTTGTTCAATAACAACTTTTTAATTTTTCTTACTTTTGAGTTTCT

>Glyma19g42060.7   sequence type=transcript   gene model=Glyma19g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGCTCTGGCATCGTTAAATATGACCTCTGTGGGGCGTAGTTGTATCTCTTACTCCGAGATCTGGTCATCGTTGGGATCTCCATACGCCGGATCTGCTAAAATACGCTTGATCCATATGGGCCTCCTCGACCACTTGTGGGACGACACCGTCGCCGGCCCAAGGCCGGAAAACGGTCTCGGCAAGCTCCGAAAACACCACACCTTCACTTTCCGACCTAGCTCCGGCAAGGAAACGGAGGGCGGGAGCGTGAGATCGTACGGAGACGAATCGTCGGAGGAAGCGACGAGAGTGACGCGTAGTATCATGATCGTGAAACCGCCCGGGTACCAGAGTGGATCGCCTCCGGTTTCTCCCGCCGGTTCTACTACTCCGATTTCTCCGTTTTCCGGTAAGGTCGTTATTTCTTTTCTACTACTCTGTTTACTGTCACGGTAAAAAAATATATATGCTTGCGCGGTCCAGTAAAAGTAAACAACGCCCCCACAATTTCGGGTAGCGGATATTTTGTCCTTTGCCAGGCATGATAAAGCAGTGTTTGGTGGGAGTAGTTATGAATGAACAATGATATTTGGTTGTTAAATTGACTTGCCCACATAAGTAGCACCTTCATTGGTCACACAGTATATATGACCACATTTGTTTGTTTTGGGTTCAGCACTTCAGCTCAACCCAAGTGTCCATTTCTCACAACTAGGTTAGCCAACTTGGTTACATTATATGATTATATAATATAATATATAGCAGCCGGATAATTAATTATGGGAAATGCTAATCAGTACGAAGAGTAAATTCAGCCTTTTATGCAGTTACTTTACTAAATTATGCTTTTTTATCTCATCCCTGATTTCTGTTTTTACCTTTTTTACACGTGTCAAGTTGATTCTTATTGTTTCGTCTCGTACCAAATAGTAATCCTCGTTAATTATTGTGTGTGAAATTCGTAGGAAGGATGATGGCTTTTGTTAATCAATAAGCAACGACTAACAGTAATAGCTAGGCATAAATTGTACTGATTTTATTTGATGTGTGTTTTTTAGGAGGAAAAGATTCGTTTCGGTTTCGAAGAAGGTCGGCATCAGATGCGTACGAGAAGAGAGGGCAGAACAGATCAGGCCCTTCTTCTCCTTTCGATGTGTGAGAAATGAGAGTCGCATTTTCTCGTACCCGAAAGCTGAGGATGTAGTCTTTTGGCCTATGCTGTATTCATTTTTGTTTAGATCTCCGTTTGCATGTATGAATGTATGTAAGGAATGAGTTGAGGTTAAGGTTGTGCCACAGTTCTGCCAGTTCACGCGAGGTAGCTTTTTGGTTTAGCTTCTTTAAGTCTTTACTTAGGTGAGCTGCGTAGTGGCTGGCAAATTGTAAGTAAGAAAGTGTAAGGGTAGAGTAGCGGTGTATCTTATTATTATGTAATGTATATTTATAATTAATAAGCCATTCTGCGTTTGTTGGTAGTGTTCATTTCTCCTCATAAATTAAGTTTTAGCTTGTTCAATAACAACTTTTTAATTTTTCTTACTTTTGAGTTTCT

>Glyma19g42060.8   sequence type=transcript   gene model=Glyma19g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGCTCTGGCATCGTTAAATATGACCTCTGTGGGGCGTAGTTGTATCTCTTACTCCGAGATCTGGTCATCGTTGGGATCTCCATACGCCGGATCTGCTAAAATACGCTTGATCCATATGGGCCTCCTCGACCACTTGTGGGACGACACCGTCGCCGGCCCAAGGCCGGAAAACGGTCTCGGCAAGCTCCGAAAACACCACACCTTCACTTTCCGACCTAGCTCCGGCAAGGAAACGGAGGGCGGGAGCGTGAGATCGTACGGAGACGAATCGTCGGAGGAAGCGACGAGAGTGACGCGTAGTATCATGATCGTGAAACCGCCCGGGTACCAGAGTGGATCGCCTCCGGTTTCTCCCGCCGGTTCTACTACTCCGATTTCTCCGTTTTCCGGTAAGGTCGTTATTTCTTTTCTACTACTCTGTTTACTGTCACGGTAAAAAAATATATATGCTTGCGCGGTCCAGTAAAAGTAAACAACGCCCCCACAATTTCGGGTAGCGGATATTTTGTCCTTTGCCAGGCATGATAAAGCAGTGTTTGGTGGGAGTAGTTATGAATGAACAATGATATTTGGTTGTTAAATTGACTTGCCCACATAAGTAGCACCTTCATTGGTCACACAGTATATATGACCACATTTGTTTGTTTTGGGTTCAGCACTTCAGCTCAACCCAAGTGTCCATTTCTCACAACTAGGAGGAAAAGATTCGTTTCGGTTTCGAAGAAGGTCGGCATCAGATGCGTACGAGAAGAGAGGGCAGAACAGATCAGGCCCTTCTTCTCCTTTCGATGTGTGAGAAATGAGAGTCGCATTTTCTCGTACCCGAAAGCTGAGGATGTAGTCTTTTGGCCTATGCTGTATTCATTTTTGTTTAGATCTCCGTTTGCATGTATGAATGTATGTAAGGAATGAGTTGAGGTTAAGGTTGTGCCACAGTTCTGCCAGTTCACGCGAGGTAGCTTTTTGGTTTAGCTTCTTTAAGTCTTTACTTAGGTGAGCTGCGTAGTGGCTGGCAAATTGTAAGTAAGAAAGTGTAAGGGTAGAGTAGCGGTGTATCTTATTATTATGTAATGTATATTTATAATTAATAAGCCATTCTGCGTTTGTTGGTAGTGTTCATTTCTCCTCATAAATTAAGTTTTAGCTTGTTCAATAACAACTTTTTAATTTTTCTTACTTTTGAGTTTCT

Coding sequences of Glyma19g42060

Limit To All Plant Sequences

>Glyma19g42060.5   sequence type=CDS   gene model=Glyma19g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCTCTGTGGGGCGTAGTTGTATCTCTTACTCCGAGATCTGGTCATCGTTGGGATCTCCATACGCCGGATCTGCTAAAATACGCTTGATCCATATGGGCCTCCTCGACCACTTGTGGGACGACACCGTCGCCGGCCCAAGGCCGGAAAACGGTCTCGGCAAGCTCCGAAAACACCACACCTTCACTTTCCGACCTAGCTCCGGCAAGGAAACGGAGGGCGGGAGCGTGAGATCGTACGGAGACGAATCGTCGGAGGAAGCGACGAGAGTGACGCGTAGTATCATGATCGTGAAACCGCCCGGGTACCAGAGTGGATCGCCTCCGGTTTCTCCCGCCGGTTCTACTACTCCGATTTCTCCGTTTTCCGGTAAGGAGGAAAAGATTCGTTTCGGTTTCGAAGAAGGTCGGCATCAGATGCGTACGAGAAGAGAGGGCAGAACAGATCAGGCCCTTCTTCTCCTTTCGATGTGTGAGAAATGA

>Glyma19g42060.6   sequence type=CDS   gene model=Glyma19g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCTCTGTGGGGCGTAGTTGTATCTCTTACTCCGAGATCTGGTCATCGTTGGGATCTCCATACGCCGGATCTGCTAAAATACGCTTGATCCATATGGGCCTCCTCGACCACTTGTGGGACGACACCGTCGCCGGCCCAAGGCCGGAAAACGGTCTCGGCAAGCTCCGAAAACACCACACCTTCACTTTCCGACCTAGCTCCGGCAAGGAAACGGAGGGCGGGAGCGTGAGATCGTACGGAGACGAATCGTCGGAGGAAGCGACGAGAGTGACGCGTAGTATCATGATCGTGAAACCGCCCGGGTACCAGAGTGGATCGCCTCCGGTTTCTCCCGCCGGTTCTACTACTCCGATTTCTCCGTTTTCCGGAGGAAAAGATTCGTTTCGGTTTCGAAGAAGGTCGGCATCAGATGCGTACGAGAAGAGAGGGCAGAACAGATCAGGCCCTTCTTCTCCTTTCGATGTGTGA

>Glyma19g42060.7   sequence type=CDS   gene model=Glyma19g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCTCTGTGGGGCGTAGTTGTATCTCTTACTCCGAGATCTGGTCATCGTTGGGATCTCCATACGCCGGATCTGCTAAAATACGCTTGATCCATATGGGCCTCCTCGACCACTTGTGGGACGACACCGTCGCCGGCCCAAGGCCGGAAAACGGTCTCGGCAAGCTCCGAAAACACCACACCTTCACTTTCCGACCTAGCTCCGGCAAGGAAACGGAGGGCGGGAGCGTGAGATCGTACGGAGACGAATCGTCGGAGGAAGCGACGAGAGTGACGCGTAGTATCATGATCGTGAAACCGCCCGGGTACCAGAGTGGATCGCCTCCGGTTTCTCCCGCCGGTTCTACTACTCCGATTTCTCCGTTTTCCGGTAAGGTCGTTATTTCTTTTCTACTACTCTGTTTACTGTCACGGTAA

>Glyma19g42060.8   sequence type=CDS   gene model=Glyma19g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCTCTGTGGGGCGTAGTTGTATCTCTTACTCCGAGATCTGGTCATCGTTGGGATCTCCATACGCCGGATCTGCTAAAATACGCTTGATCCATATGGGCCTCCTCGACCACTTGTGGGACGACACCGTCGCCGGCCCAAGGCCGGAAAACGGTCTCGGCAAGCTCCGAAAACACCACACCTTCACTTTCCGACCTAGCTCCGGCAAGGAAACGGAGGGCGGGAGCGTGAGATCGTACGGAGACGAATCGTCGGAGGAAGCGACGAGAGTGACGCGTAGTATCATGATCGTGAAACCGCCCGGGTACCAGAGTGGATCGCCTCCGGTTTCTCCCGCCGGTTCTACTACTCCGATTTCTCCGTTTTCCGGTAAGGTCGTTATTTCTTTTCTACTACTCTGTTTACTGTCACGGTAA

Predicted protein sequences of Glyma19g42060

Limit To All Plant Sequences

>Glyma19g42060.5   sequence type=predicted peptide   gene model=Glyma19g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSVGRSCISYSEIWSSLGSPYAGSAKIRLIHMGLLDHLWDDTVAGPRPENGLGKLRKHHTFTFRPSSGKETEGGSVRSYGDESSEEATRVTRSIMIVKPPGYQSGSPPVSPAGSTTPISPFSGKEEKIRFGFEEGRHQMRTRREGRTDQALLLLSMCEK*

>Glyma19g42060.6   sequence type=predicted peptide   gene model=Glyma19g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSVGRSCISYSEIWSSLGSPYAGSAKIRLIHMGLLDHLWDDTVAGPRPENGLGKLRKHHTFTFRPSSGKETEGGSVRSYGDESSEEATRVTRSIMIVKPPGYQSGSPPVSPAGSTTPISPFSGGKDSFRFRRRSASDAYEKRGQNRSGPSSPFDV*

>Glyma19g42060.7   sequence type=predicted peptide   gene model=Glyma19g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSVGRSCISYSEIWSSLGSPYAGSAKIRLIHMGLLDHLWDDTVAGPRPENGLGKLRKHHTFTFRPSSGKETEGGSVRSYGDESSEEATRVTRSIMIVKPPGYQSGSPPVSPAGSTTPISPFSGKVVISFLLLCLLSR*

>Glyma19g42060.8   sequence type=predicted peptide   gene model=Glyma19g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSVGRSCISYSEIWSSLGSPYAGSAKIRLIHMGLLDHLWDDTVAGPRPENGLGKLRKHHTFTFRPSSGKETEGGSVRSYGDESSEEATRVTRSIMIVKPPGYQSGSPPVSPAGSTTPISPFSGKVVISFLLLCLLSR*

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