Report for Sequence Feature Glyma19g41990
Feature Type: gene_model
Chromosome: Gm19
Start: 48097314
stop: 48100053
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g41990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G05600 AT
Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr3:1623485-1624704 REVERSE LENGTH=331
SoyBase E_val: 5.00E-151 ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: epoxide hydrolase activity
SoyBase N/A ISS
KOG4178
KOG
Soluble epoxide hydrolase
JGI ISS
PTHR10992 Panther
ALPHA/BETA HYDROLASE RELATED
JGI ISS
PTHR10992:SF279 Panther
EPOXIDE HYDROLASE-RELATED
JGI ISS
PF00561 PFAM
alpha/beta hydrolase fold
JGI ISS
UniRef100_I1NBV3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NBV3_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q39856 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Epoxide hydrolase n=1 Tax=Glycine max RepID=Q39856_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g41990
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g41990
Paralog Evidence Comments
Glyma03g39390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g41990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g231700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g41990
Coding sequences of Glyma19g41990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g41990.1 sequence type=CDS gene model=Glyma19g41990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCAAATAAAGCACAGAATAGTTGAAGTGAATGGCATAAAAATGCATGTTGCAGAGAAAGGAGAGGGTCCAGTGGTGTTGTTCCTCCACGGCTTCCCTGAGCTCTGGTACTCATGGCGCCACCAGATTCTCTCTCTCAGCTCCCTCGGCTACCGCGCCGTCGCTCCCGATCTCCGTGGCTACGGTGACACCGAGGCACCACCTTCAATCAGCAGCTACAACTGCTTCCACATAGTGGGTGATCTCGTTGCGCTTATTGACTCTCTGGGTGTCCAACAAGTGTTCCTTGTGGCTCATGACTGGGGAGCCATCATAGGTTGGTATCTCTGCATGTTTCGCCCTGACAAAGTTAAGGCCTATGTCTGCCTCAGTGTCCCTTTCTGGCCCAGAAACCCCAAAGTGAAGCCCGTTGATGCCATGCGGGCCATATATGGAGATGACTACTACATCTGCAGATTCCAGGAGCCAGGCAAGGCAGAAGGTGAGTTAGCCAAAAATAGCACTGAACAGGTAATAAAAAACGTATTCATAAGTCGCAAACCTGGGCCACCAATTTTGGAGAAGGAAGGAATGGGTTTCAATCCCAATACTTCAATGCCCCTTCCCACTTGGCTCTCACAAGAAGACCTCACGTACTATGCTTCTAAATTTGAAAAGACAGGCTTCACTGGAGGACTCAACTACTATAGAAATTTCAACTTAAATTGGGAGCTCACAGCACCATGGACTGGAGCACAAGTCAAAGTACCAGTGAAGTTCATTACAGGTGATTTGGATCTAGTATACACTTCACTGGGGACGAAGAACTATATTGAGAGCGGTGCTTTCAAGAAAGATGTACCAAATTTGGAGGAAGTAGTTGTGCAAGAAGGGGTGGCTCACTTTAACAACCAAGAAGCTGCAGAGGATGTCAGCAATCACATTTATGATTTTATCAAGAAGTTCTGA
Predicted protein sequences of Glyma19g41990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g41990.1 sequence type=predicted peptide gene model=Glyma19g41990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEQIKHRIVEVNGIKMHVAEKGEGPVVLFLHGFPELWYSWRHQILSLSSLGYRAVAPDLRGYGDTEAPPSISSYNCFHIVGDLVALIDSLGVQQVFLVAHDWGAIIGWYLCMFRPDKVKAYVCLSVPFWPRNPKVKPVDAMRAIYGDDYYICRFQEPGKAEGELAKNSTEQVIKNVFISRKPGPPILEKEGMGFNPNTSMPLPTWLSQEDLTYYASKFEKTGFTGGLNYYRNFNLNWELTAPWTGAQVKVPVKFITGDLDLVYTSLGTKNYIESGAFKKDVPNLEEVVVQEGVAHFNNQEAAEDVSNHIYDFIKKF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
