SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02330 | AT | Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1032479-1034928 FORWARD LENGTH=573 | SoyBase | E_val: 0 | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0004857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity | SoyBase | N/A | ISS |
| GO:0030599 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity | SoyBase | N/A | ISS |
| PTHR22931 | Panther | PHOSPHOENOLPYRUVATE DIKINASE-RELATED | JGI | ISS | |
| PTHR22931:SF5 | Panther | METHYLESTERASE INHIBITOR-RELATED | JGI | ISS | |
| PF01095 | PFAM | Pectinesterase | JGI | ISS | |
| PF04043 | PFAM | Plant invertase/pectin methylesterase inhibitor | JGI | ISS | |
| UniRef100_I1NBU8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1NBU8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E8B4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E8B4 related cluster n=1 Tax=unknown RepID=UPI000233E8B4 | SoyBase | E_val: 0 | ISS |
|
Glyma19g41960 not represented in the dataset |
Glyma19g41960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g231400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g41960.1 sequence type=CDS gene model=Glyma19g41960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCTTCATGGCTATTTCCGAGCTATCCTTGAGCTTATTCATGGTCTATGTTCTAAGCATTTTCTCCAACTTTGCGTCTCTTGCATCATCCTCTTCCTCCACCGATACCATATGCAACCTTACACCTTATCCAACATTTTGTGAATCCAATTCACCTTCTAGTAACAGCCAAGGCGACATACACGAATATGGCCGGTTTTTTGCAGGCAAATCCTTGTCATCGTCGAAGAAGTTCGTCGCATTAGTCTCTAAATACCTTTATAAATCTCCATCCAATTTCTCAAACTCCACAATTCTTGCTCTTCAAGATTGTCACCTTCTAGGTGACCTGAATAAGGACTTTTGGCATAAGACCCAACAAAGCATAAATTCCACAAACACCCTCAGTAGCTCAGAAGGTGAAAAATTGCACAATTTGCTTAGTGCTACATTGACCAACCACGACACGTGCTTAAACAGCCTTCATGAAACTACTTCAAGCCCTGACAATGACCTACTAACCCATCTTTCAAATGGAACCAAGTTTTATAGCATATCTCTTGCAATCTTCAAGCGGGGATGGGTGAACAATACTGCAAATAAGGAGAGAAAACTTGCAGAAAGAAATTATCACATGTGGGAACAGAAGCTGTACGAGATTATCAGAATAAGAGGAAGAAAATTGTTTCAGTTTGCTCCAGACAACGTTGTTGTGAGCCAAAGGGTGGTGGTGAACCCAGATGGTTCTGGAAACTTCACAACTATCAATGATGCAGTGGTTGCAGCTCCAAATAACACCGGGGTTGGAAATGGGTTTTTCGTGATTCACGTGGTGGCTGGAGTGTATGAAGAATATGTTTCTATTCCCAAAAACAAGCAGTACCTGATGATGATAGGAGATGGAATTAACCAAACCATAATCACCGGTAATCGCAGCGTGGTTGATGGTTGGACTACCTTCAATTCTGCAACATTTGCCGTGGTTGCACAAGGTTTTGTGGCAATAAACATAACATTTCGCAACACAGCTGGAGCAATCAAGCACCAAGCAGTAGCCCTCAGAAGCGGTGCAGACCTATCTGCATTTTACAATTGTAGCTTCGAAGGGTACCAAGACACCTTATACACTCATTCCCTTAGACAATTTTACAGAAACTGTGACATTTATGGCACGGTGGACTTCATATTTGGTAACGCAGCAGTTGTATTACAAGACTGTAACATCTACCCAAGACTCCCATTGCAAAATCAATTCAATGCAATTACCGCACAGGGAAGGACTGACATTAACCAAAACACCGGCACCTCCATACACAATTGTAGCATAACCGCCGCGAGTGACTTGGCCACTAGCAATGGCACCACGAAAACGTACCTAGGAAGACCCTGGAAGCAATATTCAAGAACACTTTATATGCAGTCTTTCATGGACGACGGTTTGGTCGATCCAGAGGGGTGGAAAGCTTGGTCTGGGGACTTTGCTTTGGACACACTTTATTATGCGGAATTTGATAATCAAGGGCCTGGATCTAACACTAGTAATAGGGTTACTTGGCCAGGGTACCATGTGATTAATGCCACAGATGCTGTCAATTTCACAGTTGCTAATTTCATAATAGGTGATGCTTGGCTGCCTGCGACTGGAGTACCTTACTATGCTGATTTACTCATCTGA
>Glyma19g41960.1 sequence type=predicted peptide gene model=Glyma19g41960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTFMAISELSLSLFMVYVLSIFSNFASLASSSSSTDTICNLTPYPTFCESNSPSSNSQGDIHEYGRFFAGKSLSSSKKFVALVSKYLYKSPSNFSNSTILALQDCHLLGDLNKDFWHKTQQSINSTNTLSSSEGEKLHNLLSATLTNHDTCLNSLHETTSSPDNDLLTHLSNGTKFYSISLAIFKRGWVNNTANKERKLAERNYHMWEQKLYEIIRIRGRKLFQFAPDNVVVSQRVVVNPDGSGNFTTINDAVVAAPNNTGVGNGFFVIHVVAGVYEEYVSIPKNKQYLMMIGDGINQTIITGNRSVVDGWTTFNSATFAVVAQGFVAINITFRNTAGAIKHQAVALRSGADLSAFYNCSFEGYQDTLYTHSLRQFYRNCDIYGTVDFIFGNAAVVLQDCNIYPRLPLQNQFNAITAQGRTDINQNTGTSIHNCSITAASDLATSNGTTKTYLGRPWKQYSRTLYMQSFMDDGLVDPEGWKAWSGDFALDTLYYAEFDNQGPGSNTSNRVTWPGYHVINATDAVNFTVANFIIGDAWLPATGVPYYADLLI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
