Glyma19g41880 - SoyBase

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Report for Sequence Feature Glyma19g41880

Feature Type:	gene_model
Chromosome:	Gm19
Start:	48029857
stop:	48035805
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G56260	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr1:21064647-21065577 REVERSE LENGTH=127	SoyBase	E_val: 6.00E-43	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0019827	GO-bp	Annotation by Michelle Graham. GO Biological Process: stem cell maintenance	SoyBase	N/A	ISS
GO:0048367	GO-bp	Annotation by Michelle Graham. GO Biological Process: shoot development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6SVF8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVF8_SOYBN	SoyBase	E_val: 2.00E-85	ISS
UniRef100_I1H3L8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CST complex subunit TEN1-like protein n=1 Tax=Brachypodium distachyon RepID=I1H3L8_BRADI	SoyBase	E_val: 2.00E-45	ISS

Expression Patterns of Glyma19g41880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41880

Paralog	Evidence	Comments
Glyma03g39311	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g230700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g41880

Limit To All Plant Sequences

>Glyma19g41880.3   sequence type=CDS   gene model=Glyma19g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTTGGAAATAAAATCTGGTGCATTGGTTTCTTTACAAGACCTGCGCCCATCTTCTCCTTTTTTTAAGCAAGGTGCTTCACTCAGAATAACTGGAAAGTTGCACGAATACTCTATAGAGACAGGCCTAGCAACAATTATCGATGGTGATGACATTCTAAAAGTTAGTACCAAACATCTGAGGGACCTTACTTTTCAAGTTGGCTCTGTCTACCAATTCATTGGTGAACTCCTTATCCAACCTGACAATGAGGGAGTTTTGCAAGCACGTGTTGGTAGAAACGTTGATGGGATTGATCTCAATCTTTATCATCAATCTCTGCTGCTTTTAAGACAGTTTCAAACCAATCATTTAAACAATCCAGCAACAATGTAG

Predicted protein sequences of Glyma19g41880

Limit To All Plant Sequences

>Glyma19g41880.3   sequence type=predicted peptide   gene model=Glyma19g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLEIKSGALVSLQDLRPSSPFFKQGASLRITGKLHEYSIETGLATIIDGDDILKVSTKHLRDLTFQVGSVYQFIGELLIQPDNEGVLQARVGRNVDGIDLNLYHQSLLLLRQFQTNHLNNPATM*

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