Glyma19g41840 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g41840

Feature Type:	gene_model
Chromosome:	Gm19
Start:	48000080
stop:	48009538
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27030	AT	Annotation by Michelle Graham. TAIR10: TOPLESS-related 3 \| chr5:9508913-9515263 REVERSE LENGTH=1108	SoyBase	E_val: 0	ISS
GO:0010072	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0319	KOG	WD40-repeat-containing subunit of the 18S rRNA processing complex	JGI		ISS
PTHR22847	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR22847:SF52	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_I1NBT8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NBT8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HW32	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like n=1 Tax=Medicago truncatula RepID=Q2HW32_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g41840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41840

Paralog	Evidence	Comments
Glyma03g39290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g230500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g41840

Limit To All Plant Sequences

>Glyma19g41840.1   sequence type=CDS   gene model=Glyma19g41840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCTTTGAGCCGAGAATTAGTATTTCTGATACTCCAATTTTTGGAGGAGGAGAAGCTGAAGGAGTCGGTGCACAAGCTCGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAAGAAGTTGAGAAGTACTTAACAGGGTTTACCAAAGTTGATGATAACAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTAGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACCCAGCTGTTAACTCTTAGTAATTTCAGGGAGAATGAGCAGCTGTCCAAGTACGGTGACACCAAAAATGCTAGAGGAATTATGTTGATAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTTTTCCGTGACAAACTTATCTTCCCTACCCTTAGGTCATCAAGATTGCGGACATTGATCAATCAAAGTTTAAATTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTAGCACCTACACCTGTCAATCTTCCTGTTGCTGCGGTTGCAAAGCCTGCTGCTTATACTTCAATTGGTGCTCATGGTCCCTTTCTGCCTGCCACAGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCTGCCATACCTGTCCCACAGAATCCAGTGTCTATCTTGAAGTGTCCAAGAACACCTCTGACAACTGCAGGCATGGCGGATTATCAGAATGCTGATCATGAGCAGTTAATGAAAAGACTCCGGCCTGCTCCTTCTGTAGAGGAGGTTTCATGTCCTGCTGCTCGACCAGCCTCTTGGTCGCTGGATGATCTACCAAGAACAGTGGCTATGACATTGCATCAAGGATCCTCTGTGACAAGCATGGACTTTCATCCTTCTCACCAAACCTTACTTCTCGTTGGTTCTAATAATGGTGAAATTACACTTTGGGAGCTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCATGCTCATTACCATTTCAGGCAGCTATGGTCAAAGATGCACCTATTTCTGTCAGCCGTGTCACATGGAGCCTTGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGAGTTGGCTCAGCGTATAGAGGTTGATGCCCATATTGGTGGAGTTAATGACTTGGCATTTGCTCATCCGAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTCTGGGATTTAACTGGACGGAAACTATTTAACTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAAGAGAGCATTCAGTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATATGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACTACAATGCTTTACAGTGCTGATGGAAGTAGACTGTTTTCTTGCGGAACTAGTAAAGATGGAGAATCATTTCTTGTTGAATGGAATGAAAGTGAAAGAGCTATTAAGAGAACATACAATGGGTTCAGAAAGAAATCCGCTGGTGTCGTGCAGTTTGACACAACCCAAAATTGCTTTTTGGCTGCTGGTGAAGATGGCCAAATCAAATTTTGGGACATGGACAATATTAATCTTTTGACAAGCACTGACGCAGAGGGTGGACTACAGGCCCTTCCGCACTTGAGATTCAACAAGGAAGGAAATGTGCTTGCTGTTACTACTGCAGACAATGGATTCAAAATTCTTGCTAATGCCAATGGTCTTAGATCCTTGAGAACAGTTGAAACTCCAGGATTTGAAGCATTGAGGTCACCAATTGAATCTGCTGCAGTCAAGGCATCTGGCTCTTCTGCTGTTAATGTTAGTCCTGTCAACTGTAAAGTAGAAAGGAGCTCACCAGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCATGGGTCGAAATGTGGAGAAACCTAGAACTGTGGAAGATGGAATAGATAAAGCTAAACCATGGCAGCTGTCTGAAATTGTGGATGCTGTCCAATGTCGGTTAGTTACAACGCCTGACAGTACAGATTCTTCCAGCAAGGTTGTTCGACTTTTATATACAAACTCTGGTGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGGCTCGTTGTGAACAAAATCCCAATGGGAAGGCAACTGCTAGTGTTGTTCCACAGCATTGGCAGCCCAACAGTGGTCTTCTTATGACTAATGATGTCACGGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCACTCTCAAAGAACGACTCATATGTTATGTCTGCATGTGGCGGAAAGATTTCTTTGTTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCCCCTGCCTCTACCTTTCTGGCTTTCCACCCTCAAGATAACAACATCATAGCCATTGGGATGGAGGATTCAACAATTCACATATATAATGTTAGAGTGGATGAGGTGAAATCTAAATTGAAGGGTCATCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCTGTCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTATGGAGCATTGATACATGGGAGAAAAGAAAATCAGTTCCCATACAACTACCCGCAGGAAAGGCTCCTGTTGGTGACACTCGTGTGCAGTTCCATTTAGACCAAATCCGGTTACTGGTAGCCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGATCGCATTAGGCAGTGGGTTCCACAAGATGTTCTGGCTGCTCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATTTATGCTACATTTTCTGATGGCAACACTGGGGTTTTTGATGCCGACAGCTTGAGACTAAGATGCCGTATTGCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGGGAACCAGTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAACCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAAAGTGATAGAGCCTAGTGAATCAGAAGGTAAGTGGGGAACCAGTCCACCTATGGATAATGGAATATTGAACGGTAGGGCAGCATCATCATCTACAACAAGCAACCACACACCCGACCTGGCAAAAAGATAA

Predicted protein sequences of Glyma19g41840

Limit To All Plant Sequences

>Glyma19g41840.1   sequence type=predicted peptide   gene model=Glyma19g41840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSLSRELVFLILQFLEEEKLKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKNARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGAHGPFLPATATANANALAGWMANASASSSVQAAVVTASAIPVPQNPVSILKCPRTPLTTAGMADYQNADHEQLMKRLRPAPSVEEVSCPAARPASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQTLLLVGSNNGEITLWELGLRDRLVSKPFKIWDISACSLPFQAAMVKDAPISVSRVTWSLDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRKLFNFEGHEAPVYSICPHHKESIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESERAIKRTYNGFRKKSAGVVQFDTTQNCFLAAGEDGQIKFWDMDNINLLTSTDAEGGLQALPHLRFNKEGNVLAVTTADNGFKILANANGLRSLRTVETPGFEALRSPIESAAVKASGSSAVNVSPVNCKVERSSPVRPSPILNGVDPMGRNVEKPRTVEDGIDKAKPWQLSEIVDAVQCRLVTTPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWARCEQNPNGKATASVVPQHWQPNSGLLMTNDVTGVNLDEAVPCIALSKNDSYVMSACGGKISLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQLCVWSIDTWEKRKSVPIQLPAGKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNSQLIYATFSDGNTGVFDADSLRLRCRIALSTYFSPAAALSGNQSVYPVVVAAHPLEPNQFAVGLTDGSVKVIEPSESEGKWGTSPPMDNGILNGRAASSSTTSNHTPDLAKR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain