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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G47500 | AT | Annotation by Michelle Graham. TAIR10: P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | chr2:19493247-19497882 FORWARD LENGTH=983 | SoyBase | E_val: 0 | ISS |
| GO:0007018 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule-based movement | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003777 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0239 | KOG | Kinesin (KAR3 subfamily) | JGI | ISS | |
| PTHR24115 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24115:SF135 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00225 | PFAM | Kinesin motor domain | JGI | ISS | |
| PF00307 | PFAM | Calponin homology (CH) domain | JGI | ISS | |
| UniRef100_G7KWI8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Kinesin-like polypeptides n=1 Tax=Medicago truncatula RepID=G7KWI8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E8B1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E8B1 related cluster n=1 Tax=unknown RepID=UPI000233E8B1 | SoyBase | E_val: 0 | ISS |
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Glyma19g41800 not represented in the dataset |
Glyma19g41800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g39240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g230100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g41800.3 sequence type=transcript gene model=Glyma19g41800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGCATACATTAGAAATTCGTAACAGTTCTCATAATGGCATCAATGTGCCAGATGCCGACCTTGTTCCGGTTTCATGCACTTCTGATGTCATAAATTTGATGAACTTGGGACAGAAGAATCGTGCTGTTGGTTCTACTGCCATGAATGATCGTAGTAGTCGCTCTCACAGCTGCCTAACAGTTCATGTTCAAGGAAAGAACCTGACATCAGGAAGTACTATTCGTGGTAGTATGCATCTAGTTGACCTGGCAGGAAGTGAAAGAGCTGATAAAACAGAGGCCACAGGGGATAGAATGAAGGAGGCTCAACATATCAACAAGTCACTTTCTGCCTTGGGAGATGTCATTTCTTCCCTTGCCCAAAAGAATGCACATGTTCCCTACAGGAACAGCAAACTTACTCAGCTGCTTCAGGATTCTCTTGGAGGGCAAGCAAAGACTCTCATGTTTGTTCATATAAGTCCGGAGCCAGAAGCTCTTGGAGAAACACTTAGCACACTCAAATTCGCTGAACGAGTCTCCACTGTTGAACTCGGTGCTGCGCGAGTTAATAAAGATAACTCAGATGTGAAAGAGCTTAAAGAACAGATTGCTAGTTTGAAGGCAGCCTTAGCGAGAAAGGAGGGAGGAGAAGCAGAACACTTCCAACAATCTGCCAATAGTAGCAGTCATGAAATACCCAAATTGAAATCATATGCATCTTCTCCTCCTATGCAACGTAGTTTGATAGGTGGTGCCCGTAAGCTACCAAAAGATGATTCTAGTAGCCTGAATGGCCAGAAAAATGCTGCATCAAAGTTGAAAAGACGAAGCCTAGATCTCCATGACATGCGTAAGAATTCACCTCCGTGGCCACCCGTTAGAAGTCATAGAAAGGAGGATGACAAAGAATCAATTTCTGGGGATTGGGTTGATAAGATTTCGATAAACAGAAATGACAGCTTAACTAGTGATGATAGTCTCGTGGGGCAGTGGGAAACAGAAAGCAAACAATCTTCTCCAATGTTAAGTCCCACTTTTCTCTCAGAGCCTTCTAAAATATGCATGGACCACTCCTTGCATAGAAAGGATAACCAAGAATTGTTTGATATGGCCATCACAGATGAATCTGATGAGCTTGAGATTGCAACTAGTGATTCTTCAGAATCAGACTTGCATTGGCCAGCACATATACCTAAACCAATCACCGTTTCAAGCGGATTAGGCATTAAAGCAAGGAAGAAACCAATTAATCTCAGACCAACAAAGAGCCTAGAAGCCAGGAGCATGATCCCATCATTAATCCCCATTCCCGTGCCATCAAGGAAACAACCAACCCTAGTTACTCCAGCAAGAAAGACTCCTGGGTCTATTGATGTAAAGAGAAGGATTGGGAATGCCAAGTGAGAATGCTCTTCCAAGGCTTTCCTGATTTTCTTGCTTCACTGCCTTCGATAACATTTTTACCCGGCTAAATCAACATTAGTGACAATGGTTGTGTGTCCGTATTTTTATTATATTATATTATATTTTGTATAAATTAAAAAGAAAAAAACATAGGCATTATCGTATATTTATTTTATTGTTGGAAA
>Glyma19g41800.2 sequence type=CDS gene model=Glyma19g41800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCAGAACCAGTTTTAACCTTCTCTCTTGCTTCTGTGGTGAAAGATGTTCTTCAACAACATGGTGGCCGGTTGGACGTCAACTTGGCATCAAGAAAAGCTGAAGAAGCTTCCTTGAGAAGGTATGAAGCAGCTGGGTGGCTGCGGAAGACAGTTGGAGTTGTTGGAGGGAAAGACTTGCCGGCCGAGCCTTCTGAAGAAGACTTCAGGATTGGGTTGCGTAGTGGGATTATTCTATGCAATGTTCTTAACAAAATTCAACCTGGAGCAGTGTCCAAGGTAGTTGAAGGCCCCTGTGATTCTGTTATTATTCCTGATGGGGCAGCACTGTCTGTGTATCAATACTTTGAAAATGTAAGGAATTTTCTTGTGGCTGTGGAGGAAATGGGGCTTCCTTCCTTTGAAGCTTCTGATTTGGAACAGGGAGGAAAGTCTTCAAGGATAGTGAATTGTGTTTTAGCGCTCAAATCCCATGCTGAAAGGAAATTTGGAGGAGGAAATGGGTCGTCGAAATATAGCGGGGTTGCAAAGCCACCTACCACTGGTAAAACACTTTTGAGGAAAAACTCGGAACCATTTATGAAGTCTATGTGGACTATGCCATCAGGGGACAGAGATGGTTATATGAGTGATCCCGGGCATGATCTAAATGAAAGGGGTTCTGTTTCTTCCTTAAATTCACTAGTTCGTCAATATTTGTCTGACAAGAAACCAGAAGAAATTCCCACTGTAGTGGAATCCCTGCTTAGCAAAGTCATGGAGGAGTTTGAGCATCACATGCAAATCCGACAGGAAATGTGTAAAACAACTCAAGGAGATAAAGCACCGTCTGAAACAGAATGTTCAATTTCAGAAGCTGCTTCAATTAATGAAAGGATGGAAGAAAAGGAAGATGAACAGGACGAACAAGATGAACATGACTTACAAGATGAACAAAACATACAAGATAAGCAAGAGGAAAATTATGAAGAGAAGTACAACAAGCGTGAAGACTCAAGCCGCCAGATTTTGATTTTGAAGCAGCAAAACATTGTCGAAACACAAAATAGAAGCATCCAGGAATTGAAAAGCATCGTCCATCAAACAAAATTAGGGATGCAATTCATGCAAAATGAACATCAGAAAGAGATCATTAATCTAAGTAAGCACCTGCATAGCCTAGCTTCTGCTGCTTCAGGATATCATAAAGTTCTTGACGAAAACCGCAAGCTATACAATATAGTGCAGGATTTGAAAGGAAATATTAGGGTGTACTGTAGAGTTCGACCCTTCTTGGGTGGGCAACTGAGCCATTATAGCTCCGTCGGTAACGTGGAAGAGGGAAGTATCTCGATCATAACACCTTCCAAATACGGCAAAGAGGGGAAGAAAACATTTAATTTCAATAGAGTATTTGGTCCTTCTGCAACCCAAGGGGAAGTATTCGCAGACACACAACCTCTGATTCGTTCTGTTCTGGATGGTTACAATGTCTGCATATTTGCCTATGGTCAAACAGGATCAGGAAAAACATTCACTATGTCTGGACCAGATGATATTAACGAGGAAACTATAGGTGTCAACTACCGTGCGCTGAAAGATCTTTTCTATCTCTCAGAGCAGAGGAAAGACACCATTTCTTATGAAATCTCTGTTCAGATGCTTGAAATTTACAATGAGCAAGTCAGAGACCTACTTACTACAGATGAAATTCGTAACAGTTCTCATAATGGCATCAATGTGCCAGATGCCGACCTTGTTCCGGTTTCATGCACTTCTGATGTCATAAATTTGATGAACTTGGGACAGAAGAATCGTGCTGTTGGTTCTACTGCCATGAATGATCGTAGTAGTCGCTCTCACAGCTGCCTAACAGTTCATGTTCAAGGAAAGAACCTGACATCAGGAAGTACTATTCGTGGTAGTATGCATCTAGTTGACCTGGCAGGAAGTGAAAGAGCTGATAAAACAGAGGCCACAGGGGATAGAATGAAGGAGGCTCAACATATCAACAAGTCACTTTCTGCCTTGGGAGATGTCATTTCTTCCCTTGCCCAAAAGAATGCACATGTTCCCTACAGGAACAGCAAACTTACTCAGCTGCTTCAGGATTCTCTTGGAGGGCAAGCAAAGACTCTCATGTTTGTTCATATAAGTCCGGAGCCAGAAGCTCTTGGAGAAACACTTAGCACACTCAAATTCGCTGAACGAGTCTCCACTGTTGAACTCGGTGCTGCGCGAGTTAATAAAGATAACTCAGATGTGAAAGAGCTTAAAGAACAGATTGCTAGTTTGAAGGCAGCCTTAGCGAGAAAGGAGGGAGGAGAAGCAGAACACTTCCAACAATCTGCCAATAGTAGCAGTCATGAAATACCCAAATTGAAATCATATGCATCTTCTCCTCCTATGCAACGTAGTTTGATAGGTGGTGCCCGTAAGCTACCAAAAGATGATTCTAGTAGCCTGAATGGCCAGAAAAATGCTGCATCAAAGTTGAAAAGACGAAGCCTAGATCTCCATGACATGCGTAAGAATTCACCTCCGTGGCCACCCGTTAGAAGTCATAGAAAGGAGGATGACAAAGAATCAATTTCTGGGGATTGGGTTGATAAGATTTCGATAAACAGAAATGACAGCTTAACTAGTGATGATAGTCTCGTGGGGCAGTGGGAAACAGAAAGCAAACAATCTTCTCCAATGTTAAGTCCCACTTTTCTCTCAGAGCCTTCTAAAATATGCATGGACCACTCCTTGCATAGAAAGGATAACCAAGAATTGTTTGATATGGCCATCACAGATGAATCTGATGAGCTTGAGATTGCAACTAGTGATTCTTCAGAATCAGACTTGCATTGGCCAGCACATATACCTAAACCAATCACCGTTTCAAGCGGATTAGGCATTAAAGCAAGGAAGAAACCAATTAATCTCAGACCAACAAAGAGCCTAGAAGCCAGGAGCATGATCCCATCATTAATCCCCATTCCCGTGCCATCAAGGAAACAACCAACCCTAGTTACTCCAGCAAGAAAGACTCCTGGGTCTATTGATGTAAAGAGAAGGATTGGGAATGCCAAGTGA >Glyma19g41800.3 sequence type=CDS gene model=Glyma19g41800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACTTGGGACAGAAGAATCGTGCTGTTGGTTCTACTGCCATGAATGATCGTAGTAGTCGCTCTCACAGCTGCCTAACAGTTCATGTTCAAGGAAAGAACCTGACATCAGGAAGTACTATTCGTGGTAGTATGCATCTAGTTGACCTGGCAGGAAGTGAAAGAGCTGATAAAACAGAGGCCACAGGGGATAGAATGAAGGAGGCTCAACATATCAACAAGTCACTTTCTGCCTTGGGAGATGTCATTTCTTCCCTTGCCCAAAAGAATGCACATGTTCCCTACAGGAACAGCAAACTTACTCAGCTGCTTCAGGATTCTCTTGGAGGGCAAGCAAAGACTCTCATGTTTGTTCATATAAGTCCGGAGCCAGAAGCTCTTGGAGAAACACTTAGCACACTCAAATTCGCTGAACGAGTCTCCACTGTTGAACTCGGTGCTGCGCGAGTTAATAAAGATAACTCAGATGTGAAAGAGCTTAAAGAACAGATTGCTAGTTTGAAGGCAGCCTTAGCGAGAAAGGAGGGAGGAGAAGCAGAACACTTCCAACAATCTGCCAATAGTAGCAGTCATGAAATACCCAAATTGAAATCATATGCATCTTCTCCTCCTATGCAACGTAGTTTGATAGGTGGTGCCCGTAAGCTACCAAAAGATGATTCTAGTAGCCTGAATGGCCAGAAAAATGCTGCATCAAAGTTGAAAAGACGAAGCCTAGATCTCCATGACATGCGTAAGAATTCACCTCCGTGGCCACCCGTTAGAAGTCATAGAAAGGAGGATGACAAAGAATCAATTTCTGGGGATTGGGTTGATAAGATTTCGATAAACAGAAATGACAGCTTAACTAGTGATGATAGTCTCGTGGGGCAGTGGGAAACAGAAAGCAAACAATCTTCTCCAATGTTAAGTCCCACTTTTCTCTCAGAGCCTTCTAAAATATGCATGGACCACTCCTTGCATAGAAAGGATAACCAAGAATTGTTTGATATGGCCATCACAGATGAATCTGATGAGCTTGAGATTGCAACTAGTGATTCTTCAGAATCAGACTTGCATTGGCCAGCACATATACCTAAACCAATCACCGTTTCAAGCGGATTAGGCATTAAAGCAAGGAAGAAACCAATTAATCTCAGACCAACAAAGAGCCTAGAAGCCAGGAGCATGATCCCATCATTAATCCCCATTCCCGTGCCATCAAGGAAACAACCAACCCTAGTTACTCCAGCAAGAAAGACTCCTGGGTCTATTGATGTAAAGAGAAGGATTGGGAATGCCAAGTGA
>Glyma19g41800.2 sequence type=predicted peptide gene model=Glyma19g41800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAEPVLTFSLASVVKDVLQQHGGRLDVNLASRKAEEASLRRYEAAGWLRKTVGVVGGKDLPAEPSEEDFRIGLRSGIILCNVLNKIQPGAVSKVVEGPCDSVIIPDGAALSVYQYFENVRNFLVAVEEMGLPSFEASDLEQGGKSSRIVNCVLALKSHAERKFGGGNGSSKYSGVAKPPTTGKTLLRKNSEPFMKSMWTMPSGDRDGYMSDPGHDLNERGSVSSLNSLVRQYLSDKKPEEIPTVVESLLSKVMEEFEHHMQIRQEMCKTTQGDKAPSETECSISEAASINERMEEKEDEQDEQDEHDLQDEQNIQDKQEENYEEKYNKREDSSRQILILKQQNIVETQNRSIQELKSIVHQTKLGMQFMQNEHQKEIINLSKHLHSLASAASGYHKVLDENRKLYNIVQDLKGNIRVYCRVRPFLGGQLSHYSSVGNVEEGSISIITPSKYGKEGKKTFNFNRVFGPSATQGEVFADTQPLIRSVLDGYNVCIFAYGQTGSGKTFTMSGPDDINEETIGVNYRALKDLFYLSEQRKDTISYEISVQMLEIYNEQVRDLLTTDEIRNSSHNGINVPDADLVPVSCTSDVINLMNLGQKNRAVGSTAMNDRSSRSHSCLTVHVQGKNLTSGSTIRGSMHLVDLAGSERADKTEATGDRMKEAQHINKSLSALGDVISSLAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPEALGETLSTLKFAERVSTVELGAARVNKDNSDVKELKEQIASLKAALARKEGGEAEHFQQSANSSSHEIPKLKSYASSPPMQRSLIGGARKLPKDDSSSLNGQKNAASKLKRRSLDLHDMRKNSPPWPPVRSHRKEDDKESISGDWVDKISINRNDSLTSDDSLVGQWETESKQSSPMLSPTFLSEPSKICMDHSLHRKDNQELFDMAITDESDELEIATSDSSESDLHWPAHIPKPITVSSGLGIKARKKPINLRPTKSLEARSMIPSLIPIPVPSRKQPTLVTPARKTPGSIDVKRRIGNAK* >Glyma19g41800.3 sequence type=predicted peptide gene model=Glyma19g41800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLGQKNRAVGSTAMNDRSSRSHSCLTVHVQGKNLTSGSTIRGSMHLVDLAGSERADKTEATGDRMKEAQHINKSLSALGDVISSLAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPEALGETLSTLKFAERVSTVELGAARVNKDNSDVKELKEQIASLKAALARKEGGEAEHFQQSANSSSHEIPKLKSYASSPPMQRSLIGGARKLPKDDSSSLNGQKNAASKLKRRSLDLHDMRKNSPPWPPVRSHRKEDDKESISGDWVDKISINRNDSLTSDDSLVGQWETESKQSSPMLSPTFLSEPSKICMDHSLHRKDNQELFDMAITDESDELEIATSDSSESDLHWPAHIPKPITVSSGLGIKARKKPINLRPTKSLEARSMIPSLIPIPVPSRKQPTLVTPARKTPGSIDVKRRIGNAK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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