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Report for Sequence Feature Glyma19g41780

Feature Type:gene_model
Chromosome:Gm19
Start:47959109
stop:47959438
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g41780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G49300AT Annotation by Michelle Graham. TAIR10: GATA transcription factor 16 | chr5:19984849-19985475 REVERSE LENGTH=139 SoyBaseE_val: 2.00E-18ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PTHR10071Panther TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR) JGI ISS
PF00320PFAM GATA zinc finger JGI ISS
UniRef100_G7KWI0UniRef Annotation by Michelle Graham. Most informative UniRef hit: GATA transcription factor n=1 Tax=Medicago truncatula RepID=G7KWI0_MEDTR SoyBaseE_val: 6.00E-22ISS
UniRef100_I1NBT1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NBT1_SOYBN SoyBaseE_val: 1.00E-52ISS

Expression Patterns of Glyma19g41780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g41780 not represented in the dataset
Glyma19g41780 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41780
ParalogEvidenceComments
Glyma03g39220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g229900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g41780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g41780
>Glyma19g41780.2   sequence type=CDS   gene model=Glyma19g41780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGATCTGAAGGAATGGTCATCATCTTCTGAGGAATTGAATGTGAACAGGAAATGTTGCGCTGATTGCAAAACCACCAAGACCCCACTCTGGAGAGGAGGACCAGCTGGACCCAAGACTCTATGCAACGCTTGTGGAATTAGGTATCGGAAGAGAAGGGCATGTTGGAGGAAGGGAGAGTTGAAGAAACAGAAACAGAAACAGAAACAGAGGTGGAAGATGCTGGGGGAAGAGGAACAAGCGGCG
Predicted protein sequences of Glyma19g41780
>Glyma19g41780.2   sequence type=predicted peptide   gene model=Glyma19g41780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMDLKEWSSSSEELNVNRKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRACWRKGELKKQKQKQKQRWKMLGEEEQAA






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