Glyma19g41760 - SoyBase

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Report for Sequence Feature Glyma19g41760

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47947074
stop:	47948719
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G56300	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr1:21079022-21080168 REVERSE LENGTH=156	SoyBase	E_val: 2.00E-66	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
PTHR24077	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24077:SF66	Panther		JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_I1NBS7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBS7_SOYBN	SoyBase	E_val: 1.00E-118	ISS
UniRef100_Q8H2B1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DnaJ-like protein n=1 Tax=Glycine max RepID=Q8H2B1_SOYBN	SoyBase	E_val: 1.00E-114	ISS

Expression Patterns of Glyma19g41760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41760

Paralog	Evidence	Comments
Glyma03g39200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g229700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g41760

Limit To All Plant Sequences

>Glyma19g41760.2   sequence type=transcript   gene model=Glyma19g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGTCTCCCCAGCATTCATATTAATATCATGCCCTCCTTCTGCATCCAAACCTTCATTTTGTAGTGGGTGGGGGTTTCTCATTTCTCTGCCGTTCCATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCAGAATCCTGCAACCGCTGGCGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGTCCGTAAAGTTTTTTCATTTCAGTTTTTTAATTACTATTTTTATTGTAATTTAGGCAAAAAAAAATGTTTTTTTTTTTTTTAAATGAGCAGGACTTTTGTGACTTCATGCAAGAGATGATCTCAATGATGAACAATGTGAAAGACGAGGGGGACAGTTTGGAGGACCTACAGAGGATGTTCGTGGAGATGGTGGGGGAAGATCATGGCCATGGGATCGGCTTTGACTTGAACCAGGATCAGACGGCTGGGAAGCGAGGACGCGTAAATGGATCAAAGGGCAACGCGCCCAAGCGCAGCAACTCCCGCAGTTAGTGTGCCGTACTGAATCCGTCTTGTAATTTTCTTACTTGACATTGGATGATGATTGAAATGAAAATCCTTTTGGTGGGATTAAATTAAATTTGCTGAACAACTACTAGTACATTAGTAATGCTCTTCCTTAGTTATGGAACAATACAATACACCAAGTGCAACTGTGCAAATTGTGCTTTGCATTCTAGTACTGCCCCGGGGCTGCTTCTTTTTTTTTTTTTTTTTCTTTTTTCCTGCCAAAAATATAATACTAATTCAGATCAGATGATTAACATTTTCTTGC

>Glyma19g41760.3   sequence type=transcript   gene model=Glyma19g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTTATAATATTTGCAACCAGTGTGATCTTCTTGGTACATTGAGATACCTAATTATTATTCCACACAGTAATAATTAGATTTGATTTACTGGCACACGATATTCAACAAAATAGGAAATGAGAAAAATGATAAGTGGCACGGCGGTGTAATTTCCAGAAGTTCAGGTGTCATTTCCATTAGGCAGCGCAAAAATATCTTCTAGTTCTTCTTCCCCATGTCCAAGCCAAGGCATCTCGAAGTTTCTTCCGATATATCTATCTATCTTTACCCCACGAATGAGAAGATTTTTTTTTCTCTCTCCTCTTCGCCGCTACATAAAGTCTTTCCTCTGCCTCATTATTTTACTCTTGTCTCCCCAGCATTCATATTAATATCATGCCCTCCTTCTGCATCCAAACCTTCATTTTGTAGTGGGTGGGGGTTTCTCATTTCTCTGCCGTTCCATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCAGAATCCTGCAACCGCTGGCGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGACTTTTGTGACTTCATGCAAGAGATGATCTCAATGATGAACAATGTGAAAGACGAGGGGGACAGTTTGGAGGACCTACAGAGGATGTTCGTGGAGATGGTGGGGGAAGATCATGGCCATGGGATCGGCTTTGACTTGAACCAGGATCAGACGGCTGGGAAGCGAGGACGCGTAAATGGATCAAAGGGCAACGCGCCCAAGCGCAGCAACTCCCGCAGTTAGTGTGCCGTACTGAATCCGTCTTGTAATTTTCTTACTTGACATTGGATGATGATTGAAATGAAAATCCTTTTGGTGGGATTAAATTAAATTTGCTGAACAACTACTAGTACATTAGTAATGCTCTTCCTTAGTTATGGAACAATACAATACACCAAGTGCAACTGTGCAAATTGTGCTTTGCATTCTAGTACTGCCCCGGGGCTGCTTCTTTTTTTTTTTTTTTTTCTTTTTTCCTGCCAAAAATATAATACTAATTCAGATCAGATGATTAACATTTTCTTGCCGGATTTTGTGTTTTCCCAATGCCACGCCAGAA

Coding sequences of Glyma19g41760

Limit To All Plant Sequences

>Glyma19g41760.1   sequence type=CDS   gene model=Glyma19g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCAGAATCCTGCAACCGCTGGCGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCCTACTCAGCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGACTTTTGTGACTTCATGCAAGAGATGATCTCAATGATGAACAATGTGAAAGACGAGGGGGACAGTTTGGAGGACCTACAGAGGATGTTCGTGGAGATGGTGGGGGAAGATCATGGCCATGGGATCGGCTTTGACTTGAACCAGGATCAGACGGCTGGGAAGCGAGGACGCGTAAATGGATCAAAGGGCAACGCGCCCAAGCGCAGCAACTCCCGCAGTTAG

>Glyma19g41760.2   sequence type=CDS   gene model=Glyma19g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCAGAATCCTGCAACCGCTGGCGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGTCCGTAAAGTTTTTTCATTTCAGTTTTTTAATTACTATTTTTATTGTAATTTAGGCAAAAAAAAATGTTTTTTTTTTTTTTAA

>Glyma19g41760.3   sequence type=CDS   gene model=Glyma19g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCAGAATCCTGCAACCGCTGGCGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGACTTTTGTGACTTCATGCAAGAGATGATCTCAATGATGAACAATGTGAAAGACGAGGGGGACAGTTTGGAGGACCTACAGAGGATGTTCGTGGAGATGGTGGGGGAAGATCATGGCCATGGGATCGGCTTTGACTTGAACCAGGATCAGACGGCTGGGAAGCGAGGACGCGTAAATGGATCAAAGGGCAACGCGCCCAAGCGCAGCAACTCCCGCAGTTAG

Predicted protein sequences of Glyma19g41760

Limit To All Plant Sequences

>Glyma19g41760.1   sequence type=predicted peptide   gene model=Glyma19g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDREGGSNGGSCYYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWAQNPATAGEAKRRFQQIQEAYSAVLSDQSKRSMYDAGLYDPLEEEDQDFCDFMQEMISMMNNVKDEGDSLEDLQRMFVEMVGEDHGHGIGFDLNQDQTAGKRGRVNGSKGNAPKRSNSRS*

>Glyma19g41760.2   sequence type=predicted peptide   gene model=Glyma19g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDREGGSNGGSCYYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWAQNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQVRKVFSFQFFNYYFYCNLGKKKCFFFF*

>Glyma19g41760.3   sequence type=predicted peptide   gene model=Glyma19g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDREGGSNGGSCYYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWAQNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQDFCDFMQEMISMMNNVKDEGDSLEDLQRMFVEMVGEDHGHGIGFDLNQDQTAGKRGRVNGSKGNAPKRSNSRS*

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