Glyma19g41700 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g41700

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47905830
stop:	47909184
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62630	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1645) \| chr3:23163937-23165079 REVERSE LENGTH=380	SoyBase	E_val: 6.00E-79	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07816	PFAM	Protein of unknown function (DUF1645)	JGI		ISS
UniRef100_G7I9G3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pheromone receptor-like protein n=2 Tax=Medicago truncatula RepID=G7I9G3_MEDTR	SoyBase	E_val: 6.00E-109	ISS
UniRef100_I1NBS3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBS3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g41700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41700

Paralog	Evidence	Comments
Glyma03g39140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g229100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g41700

Limit To All Plant Sequences

>Glyma19g41700.2   sequence type=CDS   gene model=Glyma19g41700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTAGTACACATTTTGGGCAATTGCTTCCTGTGCTTCATTTCTTGCTATTTCGAATATTCCAATGCTGTCCACCATTTTTCGAATATTCCAATGCTGTCCACCATGGAACCTCCGTCTGAAAGTCTAGGCCCTCCTCCATCACCATTCACCGCAGTTGCTTCTGCCACCATAGGTGCCCTCCATAGGTCACCGTTCATTGCTTTTGCGTTGAAGCAATTGTTCAAGTTGCAGGCTTTTGCACCTTCCTCTCTCTCGGGACAAGAGAGCAGAATAATGGAGGAGCTCCAAACCCCAAGCTATAATGGCCAAACCGAAAACCCAGACACTCTCCTCTTCGAAGACATTGACAGCACCTGCTCCACTCCCTACGTCAGCGCCCCTTCCAGTCCCGGCCGGGGACCCATCTCCGCCGCCGGAGGAGGGTTCTTCTACAGTGCTCCGGCTAGCCCAATGCACTTCACCATAACCGCCGCTTCCACTTACACACACTCAGCCTCTTCTTCCTCGGAAAAAAACTCTGGTTGCGATTTTGAGTTCTCGGCCCGGTTCGTTTCGAGCGGGTTTACTGGTTCCGGTTCGATGAGCTCGGCGGACGAGCTGTTCTTGAACGGTCAGATCCGGCCCATGAAGCTCTCGACCCACTTGGAGCGGCCGCAGGTCTTAGCTCCCTTGCTGGATCTCGAAGAAGAGGGCGAAGAAAACGAGGAAGTTGAAGCCAGTGTACGGGGTAGAGATCTGAGGCTGCGCGACAAATCACTCCGCAGAAGGACCAGATCCCTGTCACCTCTTCGGAACACGCCGTTAGAGTGGACGGAGAACGAGGAAAAAACGGAAAAGAAGGAAAACGTGGACCCTTCCGTTTCGAGCGGAAGTGGAAGGAGTTCCAAGAGGTGGGTTTTCTTGAGGGATTTCTTAAGAAGCAAAAGCGAGGGAAGGAGTAATAACAAGTTCTGGTCCACTATTTCCTTTTCCCCCGCCGCAAAGGACAAGAAGCCCCAAAATCAGGGAAATGGGCCGCAGAAGCCCAAGAAGGTCGCCGGAAAGCCCACTAACGGCATCGGGAAGAAGCGAGTGCCGGCGGCGTCGCCGCACGAGTTGCATTATAAAGCCAACAGAGCGCAAGCGGAGGAGTTGAGAAGGAAAACTTTTTTGCCTTATAGGCAGGGCTTGCTTGGGTGCTTGGGATTTAGTTCCAAAGGTTATGGTGCCATGAGTGGCTTTGCTAGAGCCTTAAACCCCGTCTCTTCCAGGTAA

Predicted protein sequences of Glyma19g41700

Limit To All Plant Sequences

>Glyma19g41700.2   sequence type=predicted peptide   gene model=Glyma19g41700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLVHILGNCFLCFISCYFEYSNAVHHFSNIPMLSTMEPPSESLGPPPSPFTAVASATIGALHRSPFIAFALKQLFKLQAFAPSSLSGQESRIMEELQTPSYNGQTENPDTLLFEDIDSTCSTPYVSAPSSPGRGPISAAGGGFFYSAPASPMHFTITAASTYTHSASSSSEKNSGCDFEFSARFVSSGFTGSGSMSSADELFLNGQIRPMKLSTHLERPQVLAPLLDLEEEGEENEEVEASVRGRDLRLRDKSLRRRTRSLSPLRNTPLEWTENEEKTEKKENVDPSVSSGSGRSSKRWVFLRDFLRSKSEGRSNNKFWSTISFSPAAKDKKPQNQGNGPQKPKKVAGKPTNGIGKKRVPAASPHELHYKANRAQAEELRRKTFLPYRQGLLGCLGFSSKGYGAMSGFARALNPVSSR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain