SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g41651

Feature Type:gene_model
Chromosome:Gm19
Start:47878783
stop:47882374
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g41651
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56350AT Annotation by Michelle Graham. TAIR10: Peptide chain release factor 2 | chr1:21094840-21097826 FORWARD LENGTH=482 SoyBaseE_val: 0ISS
GO:0006415GO-bp Annotation by Michelle Graham. GO Biological Process: translational termination SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003747GO-mf Annotation by Michelle Graham. GO Molecular Function: translation release factor activity SoyBaseN/AISS
GO:0016149GO-mf Annotation by Michelle Graham. GO Molecular Function: translation release factor activity, codon specific SoyBaseN/AISS
KOG2726 KOG Mitochondrial polypeptide chain release factor JGI ISS
PTHR11075Panther PEPTIDE CHAIN RELEASE FACTOR JGI ISS
PTHR11075:SF6Panther MITOCHONDRIAL PEPTIDE CHAIN RELEASE FACTOR 1 JGI ISS
PF00472PFAM RF-1 domain JGI ISS
PF03462PFAM PCRF domain JGI ISS
UniRef100_B9RFI5UniRef Annotation by Michelle Graham. Best UniRef hit: Peptide chain release factor, putative n=1 Tax=Ricinus communis RepID=B9RFI5_RICCO SoyBaseE_val: 0ISS
UniRef100_B9RFI5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptide chain release factor, putative n=1 Tax=Ricinus communis RepID=B9RFI5_RICCO SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g41651
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g41651 not represented in the dataset
Glyma19g41651 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41651
ParalogEvidenceComments
Glyma03g39081 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41651 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g228600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g41651
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g41651
>Glyma19g41651.2   sequence type=transcript   gene model=Glyma19g41651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTGAAGCATAAGCAGCAGTAACAAGTAAGCATTTTGGTCGTCTTCAATTCGAGCTGAAGGTGGAGTACCCTCATAGAATCCTTGTTTGCATTGTTTTGTCACACGCGACAGAGCATGTCCCGTTTCCTAGGAAAATCCCTTAGGACTAAGGGGCCCTTGTTTCTGCACAAAATTTTGGGAATCTCGTCCGAGTCGCATAACATCCTGGTTTTATCAAGGTATCGCCGCCACTTTTCACATTCCCTTCCCCACAATACTTCAAATTTGGTTCCAAGTACCGGGTCTCTCCAAATTCGGTTCTTTGCCTCTGAGGCCGCTGCTGCCACCACTGAACCCTCAACCTCCGATGGGCTCACGGTCCAAGGAATTCTGGCCAATAATTGGAACATTCTCGACGAAAACGACGGCGATTGGAAGAGTCATGCCACCGCCATAGCTCAATCTATTCACTTGATCAAACGCCGTTTACATGAATCACTGAAAGCGTTGCTTAACATGAGAAGAAATGCAAAAGAGAAAGAGCTAGAGGCATTGCTTTCTGGGGAGCAAGATTCTTGTTCGTGCTACATTGAGGTTCAAGCTGGTGCTGGGGGTACTGAGAGCATGGACTGGGCTGCAATGGTCATGCAGATGTATAAGTCATGGGCACAGCAACGTGGATATAAAGTAACTGTAGTGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACCATCAAAGTAGATGGTGAGTTTGCATTTGGATATGCCAAAGCAGAAATAGGAGTGCACAGGCTGGTGCGCATATCACCTTTTGACAGTAATAAGCGCCGGCATACTTCATTTGCCGCTGTGGCAGTGATTCCAATCCTTGGTGATGGATCTACCCATGTACAAATTAATGAATCTGATCTTCGAATTGAACGATTTCGTGCTGGTGGTGCTGGTGGCCAACATGTTAACACAACTGAGAGTGCTGTAAGAATAGTTCATATTCCTACAGGAGTTACTGCAACTTGTCAGAATGAAAGATCGCAGCATCAGAATAAGGCTTCAGCAATGGCTGTACTTCAGTCAAGATTAGACCAACTGGAGATGGCACGCCAGGCACAGTTCAATGCACAACATACACAATCTCTCACCGACATAACATGGGGCAGTCAGATTCGTAGTTATGTTCTCCATCCTTACCGTATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGATCCTGACTCTGTCCTTGAGGGAGATCTAGACAGTTTCATCTTAAGCTATCTGTCAGCTTCTTTGGATAAAGATGATGATGCTTAAATCATTCGAATTCTCAATCTATGGCAGCATATTGTTTATTTAGTGCTGTAATGGGTATATGCTTGTGCATGTTCAGCGTCTGAGGTAAAGTCAGCCGTCCTTTCAGTTACTGCCTTTCCTCATCAAGGCTTATCATAATATAAGGAAGCCTATTTGGCTTGCTATAATATTTTTTGGGTGACAAATAAATGAATGCATACCATTGAATTTTGAATATGGAATTATGATGCTTAAAAAGCTTGATTTTATTTGGCTTGCGCAGTCAGAATAACTTCCCTATGACCTCTGATGCAGCTGACCATGATTATTGTTCTTTAAGATTCATTTATTTGCATATAGAACTCGTATAGAAGGTACGTGAGATTCGTATCCTTTTTATCTCAGGAATAAACGATGCAAATAATAATTGAGGATGGCTTGCCAAATCTGCTCTAGGAATTAGTGGATGAACTTTTTGTAATTTATTTTCAAAATCATGACTCTCAGACAAAAAGATAGCATCTAAATCTGATTAAGAGCCCATGAATATATGGATGAATTTGTTTTTCTGTTGTTATACTAATGAATCTAACGGCAAGTATCTTTTATTTGTTTATTTTTCCCCTTTAAACTGAGAAATATCCACAAAGTGGCCAAGTGGTTAGTAATCTTAAGTTAGTGGTTAAAGGGGTTTATGTGATGTCAGGAGTTTGATTTAGTGTGTCTGGGAATGTGTTGCGTTTTCTGTTTCACGCTTTTGAAGACAACATTCCATTTTACCAAGCAGTGAACATGACTGGAGGAAAATGTAACTTACGTTCAACGGGCATATAACGTGAGTACAAATAATGTGTGTTTGGATTACAGTTACAAAGTTAAGTTCAAGGACCGAAATGTCCGATAATTAAAGTGGAGGAAATCAATATTG
Coding sequences of Glyma19g41651
>Glyma19g41651.1   sequence type=CDS   gene model=Glyma19g41651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCGTTTCCTAGGAAAATCCCTTAGGACTAAGGGGCCCTTGTTTCTGCACAAAATTTTGGGAATCTCGTCCGAGTCGCATAACATCCTGGTTTTATCAAGGTATCGCCGCCACTTTTCACATTCCCTTCCCCACAATACTTCAAATTTGGTTCCAAGTACCGGGTCTCTCCAAATTCGGTTCTTTGCCTCTGAGGCCGCTGCTGCCACCACTGAACCCTCAACCTCCGATGGGCTCACGGTCCAAGGAATTCTGGCCAATAATTGGAACATTCTCGACGAAAACGACGGCGATTGGAAGAGTCATGCCACCGCCATAGCTCAATCTATTCACTTGATCAAACGCCGTTTACATTGGGAAAAATTGAAGGTGAGGTTGGATATGTTATCATTCCAGCTGAGTAAGGAAGACCTTTGGGATGATCCGGTGCGTGCAGGTAAAATAAGCCGAGAGCACGGTTCGCTCTTGGGAAAAATGAAAGAGGTAAATGCATTTGAACAAGAGTTGCTTGAGCACATTGACATGATAAAGCTTGCGCGCGAAGAGAATGATGCGGATTTGGAATCGGAATCACTGAAAGCGTTGCTTAACATGAGAAGAAATGCAAAAGAGAAAGAGCTAGAGGCATTGCTTTCTGGGGAGCAAGATTCTTGTTCGTGCTACATTGAGGTTCAAGCTGGTGCTGGGGGTACTGAGAGCATGGACTGGGCTGCAATGGTCATGCAGATGTATAAGTCATGGGCACAGCAACGTGGATATAAAGTAACTGTAGTGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACCATCAAAGTAGATGGTGAGTTTGCATTTGGATATGCCAAAGCAGAAATAGGAGTGCACAGGCTGGTGCGCATATCACCTTTTGACAGTAATAAGCGCCGGCATACTTCATTTGCCGCTGTGGCAGTGATTCCAATCCTTGGTGATGGATCTACCCATGTACAAATTAATGAATCTGATCTTCGAATTGAACGATTTCGTGCTGGTGGTGCTGGTGGCCAACATGTTAACACAACTGAGAGTGCTGTAAGAATAGTTCATATTCCTACAGGAGTTACTGCAACTTGTCAGAATGAAAGATCGCAGCATCAGAATAAGGCTTCAGCAATGGCTGTACTTCAGTCAAGATTAGACCAACTGGAGATGGCACGCCAGGCACAGTTCAATGCACAACATACACAATCTCTCACCGACATAACATGGGGCAGTCAGATTCGTAGTTATGTTCTCCATCCTTACCGTATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGATCCTGACTCTGTCCTTGAGGGAGATCTAGACAGTTTCATCTTAAGCTATCTGTCAGCTTCTTTGGATAAAGATGATGATGCTTAA

>Glyma19g41651.2   sequence type=CDS   gene model=Glyma19g41651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCGTTTCCTAGGAAAATCCCTTAGGACTAAGGGGCCCTTGTTTCTGCACAAAATTTTGGGAATCTCGTCCGAGTCGCATAACATCCTGGTTTTATCAAGGTATCGCCGCCACTTTTCACATTCCCTTCCCCACAATACTTCAAATTTGGTTCCAAGTACCGGGTCTCTCCAAATTCGGTTCTTTGCCTCTGAGGCCGCTGCTGCCACCACTGAACCCTCAACCTCCGATGGGCTCACGGTCCAAGGAATTCTGGCCAATAATTGGAACATTCTCGACGAAAACGACGGCGATTGGAAGAGTCATGCCACCGCCATAGCTCAATCTATTCACTTGATCAAACGCCGTTTACATGAATCACTGAAAGCGTTGCTTAACATGAGAAGAAATGCAAAAGAGAAAGAGCTAGAGGCATTGCTTTCTGGGGAGCAAGATTCTTGTTCGTGCTACATTGAGGTTCAAGCTGGTGCTGGGGGTACTGAGAGCATGGACTGGGCTGCAATGGTCATGCAGATGTATAAGTCATGGGCACAGCAACGTGGATATAAAGTAACTGTAGTGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACCATCAAAGTAGATGGTGAGTTTGCATTTGGATATGCCAAAGCAGAAATAGGAGTGCACAGGCTGGTGCGCATATCACCTTTTGACAGTAATAAGCGCCGGCATACTTCATTTGCCGCTGTGGCAGTGATTCCAATCCTTGGTGATGGATCTACCCATGTACAAATTAATGAATCTGATCTTCGAATTGAACGATTTCGTGCTGGTGGTGCTGGTGGCCAACATGTTAACACAACTGAGAGTGCTGTAAGAATAGTTCATATTCCTACAGGAGTTACTGCAACTTGTCAGAATGAAAGATCGCAGCATCAGAATAAGGCTTCAGCAATGGCTGTACTTCAGTCAAGATTAGACCAACTGGAGATGGCACGCCAGGCACAGTTCAATGCACAACATACACAATCTCTCACCGACATAACATGGGGCAGTCAGATTCGTAGTTATGTTCTCCATCCTTACCGTATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGATCCTGACTCTGTCCTTGAGGGAGATCTAGACAGTTTCATCTTAAGCTATCTGTCAGCTTCTTTGGATAAAGATGATGATGCTTAA
Predicted protein sequences of Glyma19g41651
>Glyma19g41651.1   sequence type=predicted peptide   gene model=Glyma19g41651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRFLGKSLRTKGPLFLHKILGISSESHNILVLSRYRRHFSHSLPHNTSNLVPSTGSLQIRFFASEAAAATTEPSTSDGLTVQGILANNWNILDENDGDWKSHATAIAQSIHLIKRRLHWEKLKVRLDMLSFQLSKEDLWDDPVRAGKISREHGSLLGKMKEVNAFEQELLEHIDMIKLAREENDADLESESLKALLNMRRNAKEKELEALLSGEQDSCSCYIEVQAGAGGTESMDWAAMVMQMYKSWAQQRGYKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAQFNAQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDSFILSYLSASLDKDDDA*

>Glyma19g41651.2   sequence type=predicted peptide   gene model=Glyma19g41651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRFLGKSLRTKGPLFLHKILGISSESHNILVLSRYRRHFSHSLPHNTSNLVPSTGSLQIRFFASEAAAATTEPSTSDGLTVQGILANNWNILDENDGDWKSHATAIAQSIHLIKRRLHESLKALLNMRRNAKEKELEALLSGEQDSCSCYIEVQAGAGGTESMDWAAMVMQMYKSWAQQRGYKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAQFNAQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDSFILSYLSASLDKDDDA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo