Glyma19g41630 - SoyBase

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Report for Sequence Feature Glyma19g41630

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47866525
stop:	47867701
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56080	AT	Annotation by Michelle Graham. TAIR10: nicotianamine synthase 2 \| chr5:22711402-22712364 REVERSE LENGTH=320	SoyBase	E_val: 3.00E-136	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0030418	GO-bp	Annotation by Michelle Graham. GO Biological Process: nicotianamine biosynthetic process	SoyBase	N/A	ISS
GO:0071281	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion	SoyBase	N/A	ISS
GO:0071369	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to ethylene stimulus	SoyBase	N/A	ISS
GO:0071732	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide	SoyBase	N/A	ISS
GO:0030410	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nicotianamine synthase activity	SoyBase	N/A	ISS
PTHR11208	Panther	RNA-BINDING PROTEIN RELATED	JGI		ISS
PTHR11208:SF2	Panther	KH-DOMAIN RNA BINDING PROTEIN-RELATED	JGI		ISS
PF03059	PFAM	Nicotianamine synthase protein	JGI		ISS
UniRef100_B9A9Z1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nicotianamine synthase n=1 Tax=Lotus japonicus RepID=B9A9Z1_LOTJA	SoyBase	E_val: 2.00E-175	ISS
UniRef100_I1NBR5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBR5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g41630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41630

Paralog	Evidence	Comments
Glyma03g39050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g228400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g41630

Limit To All Plant Sequences

>Glyma19g41630.1   sequence type=CDS   gene model=Glyma19g41630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTGCGAGGAAGAATTGTTGATAGAAAAAGTGTGCTCGCTCTATGAACAAATCTCAAGCCTCGAGAGTCTCAAACCTTGCAAGAATGTCGACATGCTGTTCACCAAACTAGTCCTGACATGCATACCCCCAAGCCCAATCGATGTCACAAAGCTAAACAAAACCGTTCAAGACATTCGATCCCACCTTATAAAACTATGTGGTGAAGCCGAGGGACACTTAGAGAGCCACTACTCAACCATCCTAGGCTCATACGACAAACCCCTTAACCACCTTAATATTTTCCCCTATTATTCTAACTACCTCAAACTTGGTCACCTCGAGTTCACTATCCTTAGCCAACACTGCACCCATGTTCCCACCAAAGTTGCCTTCGTGGGCTCGGGGCCCCTTCCTCTTACCTCAATTGTGTTGGCATCGAACCACTTACCTTCCACCACTTTCCACAACTATGACATGGACCCTTTAGCCAATTCCAACGCTATGCGCTTGGTTTCCTCTGACCCTGACTTGTCCAAGCGCATGTTTTTCCACACCAACGACATATTGGAAGTGTCGAACGCTTTGAAGGAGTACGAGGTTGTTTACTTGGCAGCACTTGTGGGCATGGACAAGGAGGGGAAGAATCGAATCATTGATCACTTGGGCAAGCACATGAACCCTGGGGCACTTCTTATGCTCAGGAGTGCTCATGGGGCAAGGGCTTTTCTCTACCCTGTGGTTGAGCCTTGTGATTTTCGAGGTTTTGAGGTTCTCTCTGTGTTCCACCCCTCCGATGAGGTCATCAACTCGGTTGTCATAGCACGTAAATTATATCACTCTCTTGAGCAAGGCCTTGTTGGCTCTATGATCCTACCTAACAAGTGTTCCGAGATTCAAGCCTTCAACCCTCTCAACCATGGCAACATGATTGAGGAATTGGCCGTTGAGGAGCAACTCTTGTGA

Predicted protein sequences of Glyma19g41630

Limit To All Plant Sequences

>Glyma19g41630.1   sequence type=predicted peptide   gene model=Glyma19g41630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCEEELLIEKVCSLYEQISSLESLKPCKNVDMLFTKLVLTCIPPSPIDVTKLNKTVQDIRSHLIKLCGEAEGHLESHYSTILGSYDKPLNHLNIFPYYSNYLKLGHLEFTILSQHCTHVPTKVAFVGSGPLPLTSIVLASNHLPSTTFHNYDMDPLANSNAMRLVSSDPDLSKRMFFHTNDILEVSNALKEYEVVYLAALVGMDKEGKNRIIDHLGKHMNPGALLMLRSAHGARAFLYPVVEPCDFRGFEVLSVFHPSDEVINSVVIARKLYHSLEQGLVGSMILPNKCSEIQAFNPLNHGNMIEELAVEEQLL*

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