Glyma19g41610 - SoyBase

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Report for Sequence Feature Glyma19g41610

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47855035
stop:	47861085
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23380	AT	Annotation by Michelle Graham. TAIR10: KNOTTED1-like homeobox gene 6 \| chr1:8297499-8302492 REVERSE LENGTH=327	SoyBase	E_val: 2.00E-82	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0048513	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0773	KOG	Transcription factor MEIS1 and related HOX domain proteins	JGI		ISS
PTHR11850	Panther	HOMEOBOX PROTEIN	JGI		ISS
PTHR11850:SF43	Panther		JGI		ISS
PTHR11850:SF45	Panther		JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF03789	PFAM	ELK domain	JGI		ISS
PF03790	PFAM	KNOX1 domain	JGI		ISS
PF03791	PFAM	KNOX2 domain	JGI		ISS
UniRef100_C6TEF2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TEF2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7I9I1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homeobox transcription factor KN2 n=1 Tax=Medicago truncatula RepID=G7I9I1_MEDTR	SoyBase	E_val: 3.00E-118	ISS

Expression Patterns of Glyma19g41610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41610

Paralog	Evidence	Comments
Glyma03g39041	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g228300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g41610

Limit To All Plant Sequences

>Glyma19g41610.2   sequence type=transcript   gene model=Glyma19g41610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCCAAACTTTGTGAATTCATTTTCCTCGTTTGTAATTGTAGGGACCCACGTATTAAAGCTGGCCAATGAAAGAAGGTTACGTTGCAGTGAGCGATTTTCTCCAGTGAGAATCTCACTCAGTCACTGAGACAGTGTTCTACACATACGTACGACCTACACTGACACCACCTACTTACATGACTTGACTTCCCACACTTGTTCACTGTTCAGTGTTCACACTTCACACACTCACTTCTTACAGATTCCCACACTCTCTCACCTTCCTTTTTCTTTCTTTTGTTCCTTTCCCCAGCCAGGTCTTTCTTGGAAAAGAAAAAGTCTTTGGGTTTGTGCAGTAGTTGAGTTGAGGAAGTGATGGAAGCAGTTTACAGGTTGAAACCTCTTTTGGATGTGGTTAGAGTTGGGAACGCTACCACTTCTGAGATGCGTCTTGAATCAACGGCTAATTGTTACCTGCAGCTAGAAGCTCCTCAACCTCAAGAGAATAATAATGTAACCGACTCATCATCAGATATGTCGGATCGGATAATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATTGAATGCCAAAAGGTTGGAGCACCGCCAGAACTGGCATGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCTCGCCGTGAGATAGGGGAGGGCCCTGAACTTGACCACTTCATGGAAACATTCTGCCAAGTTCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACTTTGTTTTTGGGTGACATGGAATCACAACTCAGCAACCTTTGTAATGAAACACTAACAAAGTCATCGGATAACAACAACCGCTCCGACGAGGTAGCTAGTGGGGCATCAGAAGAGGAATTAAGTTGTGGGGAGATGGAAGCATTTGAAGATAATGTATCTTCAGTAACTTGTCCAAGTGATCAAAGGCTTAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGGTTTGAGAAAGGAATTTCTGAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGGCACTCATGGGCTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGTAATTGCATTTAATATCATGCATAAAGCACACTAATGTAACATATTTATGTCTAAACGAAAATTATGTTCCTCTTTACCTTCAATTAGTCCAGATTAATTTGTGTGCGTGA

>Glyma19g41610.3   sequence type=transcript   gene model=Glyma19g41610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCCAAACTTTGTGAATTCATTTTCCTCGTTTGTAATTGTAGGGACCCACGTATTAAAGCTGGCCAATGAAAGAAGGTTACGTTGCAGTGAGCGATTTTCTCCAGTGAGAATCTCACTCAGTCACTGAGACAGTGTTCTACACATACGTACGACCTACACTGACACCACCTACTTACATGACTTGACTTCCCACACTTGTTCACTGTTCAGTGTTCACACTTCACACACTCACTTCTTACAGATTCCCACACTCTCTCACCTTCCTTTTTCTTTCTTTTGTTCCTTTCCCCAGCCAGGTCTTTCTTGGAAAAGAAAAAGTCTTTGGGTTTGTGCAGTAGTTGAGTTGAGGAAGTGATGGAAGCAGTTTACAGGTTGAAACCTCTTTTGGATGTGGTTAGAGTTGGGAACGCTACCACTTCTGAGATGCGTCTTGAATCAACGGCTAATTGTTACCTGCAGCTAGAAGCTCCTCAACCTCAAGAGAATAATAATGTAACCGACTCATCATCAGATATGTCGGATCGGATAATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATTGAATGCCAAAAGGTTGGAGCACCGCCAGAACTGGCATGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCTCGCCGTGAGATAGGGGAGGGCCCTGAACTTGACCACTTCATGGAAACATTCTGCCAAGTTCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACTTTGTTTTTGGGTGACATGGAATCACAACTCAGCAACCTTTGTAATGAAACACTAACAAAGTCATCGGATAACAACAACCGCTCCGACGAGGTAGCTAGTGGGGCATCAGAAGAGGAATTAAGTTGTGGGGAGATGGAAGCATTTGAAGATAATGTATCTTCAGTAACTTGTCCAAGTGATCAAAGGCTTAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGGTTTGAGAAAGGAATTTCTGAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGGCACTCATGGGCTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAATTACTGGTCTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCTACCGAGGACATGCGATTTGCCGTCATGGACGGATTAAGAGGCGGCGGTGGCGGCGGCATAGGAGGGCCTATGTTGTTTTAGCTCTGGAAGTGCTCCTCAACGATCTGAACTTGTACCCTTCGTAATTGCAGGAGCAATGTATGTGCATTGCATTCCTGTTACACGTGATATATATACTAAATTTTAGAGACTGAACTGTTGTTTAGCTAATATACTTGTCAAAGTTGTAGTTATAGTAGTGTAATGCGCCATTGTTATGCAGTATTCCTGAATCTTTGATTATATTATAACAATGTCGTGCTGAAGAAAAATAGAAAAAAAGAAAGAAAAGAATGGATCTTCTTCTAGTTAGCTGCTCTTTCATTTTCGCAAAAATTATTACTGAGCTTAGTGATTATTAATTCTTGGG

Coding sequences of Glyma19g41610

Limit To All Plant Sequences

>Glyma19g41610.1   sequence type=CDS   gene model=Glyma19g41610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGTTTACAGGTTGAAACCTCTTTTGGATGTGGTTAGAGTTGGGAACGCTACCACTTCTGAGATGCGTCTTGAATCAACGGCTAATTGTTACCTGCAGCTAGAAGCTCCTCAACCTCAAGAGAATAATAATGTAACCGACTCATCATCAGATATGTCGGATCGGATAATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATTGAATGCCAAAAGGTTGGAGCACCGCCAGAACTGGCATGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCTCGCCGTGAGATAGGGGAGGGCCCTGAACTTGACCACTTCATGGAAACATTCTGCCAAGTTCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACTTTGTTTTTGGGTGACATGGAATCACAACTCAGCAACCTTTGTAATGAAACACTAACAAAGTCATCGGATAACAACAACCGCTCCGACGAGGTAGCTAGTGGGGCATCAGAAGAGGAATTAAGTTGTGGGGAGATGGAAGCATTTGAAGATAATGTATCTTCAGTAACTTGTCCAAGTGATCAAAGGCTTAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGGTTTGAGAAAGGAATTTCTGAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGGCACTCATGGGCTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAATTACTGGTCTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCTACCGAGGACATGCGATTTGCCGTCATGGACGGATTAAGAGGCGGCGGTGGCGGCGGCATAGGAGGGCCTATGTTGTTTTAG

>Glyma19g41610.2   sequence type=CDS   gene model=Glyma19g41610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGTTTACAGGTTGAAACCTCTTTTGGATGTGGTTAGAGTTGGGAACGCTACCACTTCTGAGATGCGTCTTGAATCAACGGCTAATTGTTACCTGCAGCTAGAAGCTCCTCAACCTCAAGAGAATAATAATGTAACCGACTCATCATCAGATATGTCGGATCGGATAATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATTGAATGCCAAAAGGTTGGAGCACCGCCAGAACTGGCATGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCTCGCCGTGAGATAGGGGAGGGCCCTGAACTTGACCACTTCATGGAAACATTCTGCCAAGTTCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACTTTGTTTTTGGGTGACATGGAATCACAACTCAGCAACCTTTGTAATGAAACACTAACAAAGTCATCGGATAACAACAACCGCTCCGACGAGGTAGCTAGTGGGGCATCAGAAGAGGAATTAAGTTGTGGGGAGATGGAAGCATTTGAAGATAATGTATCTTCAGTAACTTGTCCAAGTGATCAAAGGCTTAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGGTTTGAGAAAGGAATTTCTGAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGGCACTCATGGGCTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGTAATTGCATTTAATATCATGCATAAAGCACACTAA

>Glyma19g41610.3   sequence type=CDS   gene model=Glyma19g41610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGTTTACAGGTTGAAACCTCTTTTGGATGTGGTTAGAGTTGGGAACGCTACCACTTCTGAGATGCGTCTTGAATCAACGGCTAATTGTTACCTGCAGCTAGAAGCTCCTCAACCTCAAGAGAATAATAATGTAACCGACTCATCATCAGATATGTCGGATCGGATAATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATTGAATGCCAAAAGGTTGGAGCACCGCCAGAACTGGCATGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCTCGCCGTGAGATAGGGGAGGGCCCTGAACTTGACCACTTCATGGAAACATTCTGCCAAGTTCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACTTTGTTTTTGGGTGACATGGAATCACAACTCAGCAACCTTTGTAATGAAACACTAACAAAGTCATCGGATAACAACAACCGCTCCGACGAGGTAGCTAGTGGGGCATCAGAAGAGGAATTAAGTTGTGGGGAGATGGAAGCATTTGAAGATAATGTATCTTCAGTAACTTGTCCAAGTGATCAAAGGCTTAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGGTTTGAGAAAGGAATTTCTGAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGGCACTCATGGGCTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAATTACTGGTCTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCTACCGAGGACATGCGATTTGCCGTCATGGACGGATTAAGAGGCGGCGGTGGCGGCGGCATAGGAGGGCCTATGTTGTTTTAG

Predicted protein sequences of Glyma19g41610

Limit To All Plant Sequences

>Glyma19g41610.1   sequence type=predicted peptide   gene model=Glyma19g41610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAVYRLKPLLDVVRVGNATTSEMRLESTANCYLQLEAPQPQENNNVTDSSSDMSDRIIKIQIANHPLYPDLLSAYIECQKVGAPPELACLLEEIGRESHRMNARREIGEGPELDHFMETFCQVLHRYKEELSRPFNEATLFLGDMESQLSNLCNETLTKSSDNNNRSDEVASGASEEELSCGEMEAFEDNVSSVTCPSDQRLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDARMALMGWWNTHHRWPYPTEEEKVKLSEITGLDQKQINNWFINQRKRHWKPTEDMRFAVMDGLRGGGGGGIGGPMLF*

>Glyma19g41610.2   sequence type=predicted peptide   gene model=Glyma19g41610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAVYRLKPLLDVVRVGNATTSEMRLESTANCYLQLEAPQPQENNNVTDSSSDMSDRIIKIQIANHPLYPDLLSAYIECQKVGAPPELACLLEEIGRESHRMNARREIGEGPELDHFMETFCQVLHRYKEELSRPFNEATLFLGDMESQLSNLCNETLTKSSDNNNRSDEVASGASEEELSCGEMEAFEDNVSSVTCPSDQRLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDARMALMGWWNTHHRWPYPTVIAFNIMHKAH*

>Glyma19g41610.3   sequence type=predicted peptide   gene model=Glyma19g41610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAVYRLKPLLDVVRVGNATTSEMRLESTANCYLQLEAPQPQENNNVTDSSSDMSDRIIKIQIANHPLYPDLLSAYIECQKVGAPPELACLLEEIGRESHRMNARREIGEGPELDHFMETFCQVLHRYKEELSRPFNEATLFLGDMESQLSNLCNETLTKSSDNNNRSDEVASGASEEELSCGEMEAFEDNVSSVTCPSDQRLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDARMALMGWWNTHHRWPYPTEEEKVKLSEITGLDQKQINNWFINQRKRHWKPTEDMRFAVMDGLRGGGGGGIGGPMLF*

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