SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G56500 | AT | Annotation by Michelle Graham. TAIR10: haloacid dehalogenase-like hydrolase family protein | chr1:21159775-21167092 FORWARD LENGTH=1055 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009773 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG2914 | KOG | Predicted haloacid-halidohydrolase and related hydrolases | JGI | ISS | |
| PTHR24104 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24104:SF9 | Panther | JGI | ISS | ||
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | ISS | |
| PF01436 | PFAM | NHL repeat | JGI | ISS | |
| PF08534 | PFAM | Redoxin | JGI | ISS | |
| UniRef100_B9RFK4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 2-deoxyglucose-6-phosphate phosphatase, putative n=1 Tax=Ricinus communis RepID=B9RFK4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E8AC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E8AC related cluster n=1 Tax=unknown RepID=UPI000233E8AC | SoyBase | E_val: 0 | ISS |
|
Glyma19g41590 not represented in the dataset |
Glyma19g41590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g39020 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g228100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g41590.1 sequence type=CDS gene model=Glyma19g41590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCATGGCATTTGAAACGACTCATTTTTTACTATCGCGCCCAACCGCGTCCACCTCAACGCTCTTCTTACTCTCTTCGAATCTCACACGACCCAAACCTGCTTCGCTTCCTTCTCGATTCTTCCATTGCCGATCGAAACGCCTCGTCTTGACGCCTCGATTCGCCGTGAAAGCCTGCGCGGTGAACGTCGAGGAGAAGAATGTCGCTGCAATATCGGGAGAGTGGGGTAAGGTTTCCGCGGTGTTGTTCGACATGGACGGCGTGCTTTGCAACAGCGAAGAGCCTTCTAGAAGAGCTGGCGTTGATTTGTTCGCCGAGATGGGCGTCGATGTCACCGTCGACGATTTCGTACCGTTTATGGGAACTGGAGAAGCAAATTTTTTGGGAGGTGTTGCTTCTGTTAAGGGAGTTAAGGGATTTGATCCAGAAGCTGCAAAAAAAAGGTTTTTTGAAATATATTTGGATAAGTATGCAAAACCAGATTCTGGAATAGGATTTCCAGGTGCTCTTGAACTCATTTCTCAGTGTAAAAGCAAAGGGCTTAAAGTGGCTGTTGCGTCTAGTGCTGATCGTATAAAGGTTGATGCAAATCTAGCTGCTGCTGGTTTACCATTGTCAATGTTCGATGCAATTGTGTCTGCTGATGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCATCAAGAATATTGAATGTGCCCTCCAATGAGTGCATTGTTATAGAAGATGCGCTAGCTGGAGTGGAAGCTGCCAAAGCTGCACAAATGAGATGCATAGCTGTAAGGACCACATTATCAGACGAGGCTCTAGAACCAGCTGGCCCAACACTTATCCGAGATAACATAGGAAGTGTTTCGCTTGATGATATTCTCAGTGGTGGCTCTGTTGGATATAATAAGAGGATGCAGGGCTCTGAAACACTAAATGATTTTGCGGAGTCTTCATCTACTGTGCTTGCTGGAGGGTTGCAGGGTTCTCGGCGAGATATACTGAGATTTGGAAGTCTGGGAATTGCTATCTCTTGCCTTTTCTTCACCATAAGTAACTGGAAGGCAATGCAATATGCTTCCCCTAAAGCAGTTTGGAATAAGTTGTTTGGTGTTACCCAGCCACCCTTGGAGCAGAAAGAAGATAACTCAAGAGATGATAGGATCCAGCAATTTGTGAACTACATATCTGATCTGGAAAGCAGGGGAAATGCTCAGATTGTTCCAGAATTTCCGTCTAAACTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAGTTGTATTGCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTGTTGCCAGAGCTAGATGTTTTGGAGAAAAAATACAAAGATATGCCGTTCGTTGTTGTGGGTGTTCATTCTGCAAAATTTGATAATGAGAAAGATTCTGAAGCCATTCGCAATGCAGTTCTACGCTATGGCATTTCTCACCCAGTTGTCAATGATGGAGACATGTATCTTTGGCGGAAGTTGGGTATAAACTCATGGCCAACATTTGCTATTGTTGGCCCCAATGGTAAGGTTCTTGCACAACTTGCAGGAGAAGGTCACAAGAAGGATCTAGATGATTTTGTGGAGGCTGCACTTCTGTTTTATGGAAAACAGAACATGTTGGACAATACGCCAATTTCATTGAGTTTGGAGAAAGATAATGATCCTCGCCTTTCCACATCTCCATTAAAGTTTCCTGGAAAGCTAGCAATTGATGTCCTTAATAACAGGCTTTTTATTTCTGACAGCAACCATAACCGCATAGTGGTTACTGACCTTGATGGGAATTTTATTGTACAAATTGGGAGCAGTGGGGAGGAAGGTTTGCAGGATGGTTCCTTCGATGATGCTACTTTTAACCGCCCTCAGGGCCTTGCTTATAATGCAAAGAAAAATATACTTTATGTTGCAGACACCGAAAACCATGCTTTGAGGGAAATTGATTTTGTTAACGAGAAAGTGAGGACTCTTGCGGGAAATGGGACCAAGGGCTCTGATTATGTTGGAGGTGGAAAAGGAGACTCTCAGCTCCTCAATTCCCCTTGGGATGTATGCTTTCATCCATTTGACGAAAAAATCTATATTGCCATGGCTGGCCAACATCAGATTTGGGAGCACAATTTATTGGATGCAACTACAAGAGTATTTAGTGGTGATGGCTATGAAAGAAATTTAAATGGATCAAGTTCTACAAGCACATCATTTGCCCAACCTTCTGGTCTTTCGTTGTCTCAAGATCTAAGGGAGATCTACATTGCTGATAGTGAGAGTAGTTCAATTCGAGCTATGGATCTGAAAACAAGAGGATCTCAGTTGTTAGCTGGTGGTGACCCAATGTTCGCTGACAATTTGTTTAAGTTTGGTGATCAAGATGGAATAGGCTCTGAGGTACTTCTTCAACATCCATTGGGAGTTGTGTGTGGAAATGATGGTGAAATTTATATTGCAGATAGCTACAATCACAAGATCAAGAAGTTAGATCCAACCAGTAAAAGAGTTAGCACCATTGCGGGGACCGGAAAAGCTGGTTTCAAAGATGGAACAGCTGTAAAAGCTCAGCTCTCTGAACCATCAGGAATTGTTGAAGGGAACAAGGGGAGATTATTCATAGCTGACACAAACAACAGCTTAATTCGATATCTAGATTTAAACATTAATGAAACTGAACTCCGTACGTTGGAGCTCAAAGGAATTCAGCCTCCTAAGCCAAAATCAAGATCTTTTAAACGTCTTAGACGACGAGCATCAGCTGACACAATGCCAATTACCATTGACACCATTTCATCAAATGAGGGAAACTTGTCTATTAAAATATCATTACCAAATGAGTATCATTTCTCAAAGGAAGCACGCAGTAGATTCAGCGTTGATATTGAACCTGAAGATGCTGTGAATATTGATCCACTCGATGGATTTCTTAGTCCAGAAGGATCTGCAACTCTTCACTTTAAAAGATCCTCTAACAATGCTTCAGTGGGAAGAATTAATTGCAAGGTTTACTATTGCAAGGAAGATGAAGTTTGTTTGTACCAGTCTTTGCTGTTTGAGGTCCCCTTCCAAGAGGGAGTTTCTAACCCTGCCGAAGCAGACGTCACTCTTGCACATTTTGTGAAACCCAAAACTTCAACCAGCAACTTCCTGCAGTCAGTTGCCCCTTAA
>Glyma19g41590.1 sequence type=predicted peptide gene model=Glyma19g41590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMAFETTHFLLSRPTASTSTLFLLSSNLTRPKPASLPSRFFHCRSKRLVLTPRFAVKACAVNVEEKNVAAISGEWGKVSAVLFDMDGVLCNSEEPSRRAGVDLFAEMGVDVTVDDFVPFMGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLDKYAKPDSGIGFPGALELISQCKSKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAASRILNVPSNECIVIEDALAGVEAAKAAQMRCIAVRTTLSDEALEPAGPTLIRDNIGSVSLDDILSGGSVGYNKRMQGSETLNDFAESSSTVLAGGLQGSRRDILRFGSLGIAISCLFFTISNWKAMQYASPKAVWNKLFGVTQPPLEQKEDNSRDDRIQQFVNYISDLESRGNAQIVPEFPSKLDWLNTAPLQFRRDLKGKVVLLDFWTYCCINCMHVLPELDVLEKKYKDMPFVVVGVHSAKFDNEKDSEAIRNAVLRYGISHPVVNDGDMYLWRKLGINSWPTFAIVGPNGKVLAQLAGEGHKKDLDDFVEAALLFYGKQNMLDNTPISLSLEKDNDPRLSTSPLKFPGKLAIDVLNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLQDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVNEKVRTLAGNGTKGSDYVGGGKGDSQLLNSPWDVCFHPFDEKIYIAMAGQHQIWEHNLLDATTRVFSGDGYERNLNGSSSTSTSFAQPSGLSLSQDLREIYIADSESSSIRAMDLKTRGSQLLAGGDPMFADNLFKFGDQDGIGSEVLLQHPLGVVCGNDGEIYIADSYNHKIKKLDPTSKRVSTIAGTGKAGFKDGTAVKAQLSEPSGIVEGNKGRLFIADTNNSLIRYLDLNINETELRTLELKGIQPPKPKSRSFKRLRRRASADTMPITIDTISSNEGNLSIKISLPNEYHFSKEARSRFSVDIEPEDAVNIDPLDGFLSPEGSATLHFKRSSNNASVGRINCKVYYCKEDEVCLYQSLLFEVPFQEGVSNPAEADVTLAHFVKPKTSTSNFLQSVAP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
