Glyma19g41560 - SoyBase

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Report for Sequence Feature Glyma19g41560

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47794235
stop:	47797905
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09380	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr1:3026351-3029322 REVERSE LENGTH=374	SoyBase	E_val: 3.00E-146	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG4510	KOG	Permease of the drug/metabolite transporter (DMT) superfamily	JGI		ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_G7I8G0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7I8G0_MEDTR	SoyBase	E_val: 5.00E-160	ISS
UniRef100_UPI000233E606	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E606 related cluster n=1 Tax=unknown RepID=UPI000233E606	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g41560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g41560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g227900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g41560

Limit To All Plant Sequences

>Glyma19g41560.2   sequence type=transcript   gene model=Glyma19g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCTACCAAACCCCGCAAGAAATACATGGAAACCGTTTCTTTTGTGTAAAAATAAAATTAAAAAAGATCAATTGCAGCTATTCTTGTCACCGTTTCTTTAATTTGTCTCTTACTTCACGCAAGTTGTTCACGGCTCCTCTTTATATGTACACGTACTATCTCTCATGCATTTCATTCATCACATACAACACTCTCTCCAAAGTTCAAATTAAGACTGAGGGGTGAGAAAGAGAGAATTGATATGGGTGCCGGTCTAGTTGCGTTCCTCTTAATGGTTCTTGTGCAATTGGTCTATGCAGTGATGAACATTACTTCAAAGCTTGCAATAGAATCTGGAATGAGCCCTCTTGTCCTTGTTGCTTATCGACAACTCTTTGCTACTGTGTCCATTGCTCCCTTTGCTTATTGGCTCGAGTGGAATACGCTTCCCAGGATTACACAGCGTCTTATGATTCAGATATTATTTTCGTCCCTGACCGGAGTTACAGGAAATCAGATGCTTTATTTTGTGGGGCTGAAATATTCATCCGCTACAATTGCATGTGCACTGACAAATTTGCTCCCAGCTTTCACTTTCATCCTTGCAGTTCTCTTCAGACAAGAGAATTTGGGAATCAAGAAGAGGGCTGGTCTAGCAAAGGTATTCGGGACAATATTGTGTGTGAGTGGAGCCTTGCTTTTGTCATTTTACCATGGAAAAACCATTGGTTTAGGCCAATCAAGTATTCACTGGAGATATGCTGAGAAAATGGAAGGAACTAGCTCTTCTGGCAAAGGAAACATGTTCCTAGGCCCTTTGGTCGTAATTCTTAGCACCCTTGTTTGGGCAGCATGGTTCATAATTCAAAAAGACATAAGCAAGACATTTCCAGCTCCTTACACGAGCACTGGCTTAATGTGTTTCATGGCAAGCTTTCAATGCGTGATCATTGCCGTGTGTGTCGACCACAGGGCCTCAGCTTGGTCACTCCACAATGCTATGAGACTTTCCTCTGCCCTTTATGCGGGAATATTTTGCACTGGATTAGCCTATTGCCTCATGTCGTGGACCATTGAGAGAAAAGGTCCTCTTTATGTCTCTGTATTTACCCCTTTGCAGCTTGTCCTCACTGCCATTTTGAGCTGGGCTTTGCTTCGGGAGAAATTATATGTTGGAACTGCCGTAGGGTCTCTCTTGATAGTTTTGGGACTCTATTCTGTTCTCTGGGGAAAGAGTGAAGAGGTGAATAAGGGAGACGGTATTGAAGAAGATGCAGTTAAAGAAGCAGTCAAGGATTCGAAGAATGACATGGAATTGCAATCATATGTGCCATCCAATGGTAATAATGGTCGTGTTATTGCATGAAGAAGGGACGCGGCAGAGTGAGATTCCTCGCAAGATGCTAGTAGCTAAGGATTGAGAAAGTTTCGGTTATTTGTCTTTATTCTATTTTTGCTCCCTACCAGTAAATTTGAATTTTGATATGTGTAATCTTGTGTCACATTTGAAAGTGGTCCACAACTCTTTGCAGTTGCATTGAAGACATGTATTAATATTATTATTATTATTATTTATATATTAATAAACCCGGAATCAGTTATTCCTTTAATATGTGTCATCAATGTTAAACTATGATTTCAATTCGAATCTTACTGTAGGGTACTTTTCAAAATTTCCATTTCTTTAATACGATTCGTTATAAGATTATAGAAC

Coding sequences of Glyma19g41560

Limit To All Plant Sequences

>Glyma19g41560.1   sequence type=CDS   gene model=Glyma19g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGAATTTGATAAGTCAACTTCATTTCTTTTCTTTAATCTCTCCTTTCCTCTCAGGAATACGCTTCCCAGGATTACACAGCGTCTTATGATTCAGATATTATTTTCGTCCCTGACCGGAGTTACAGGAAATCAGATGCTTTATTTTGTGGGGCTGAAATATTCATCCGCTACAATTGCATGTGCACTGACAAATTTGCTCCCAGCTTTCACTTTCATCCTTGCAGTTCTCTTCAGACAAGAGAATTTGGGAATCAAGAAGAGGGCTGGTCTAGCAAAGGTATTCGGGACAATATTGTGTGTGAGTGGAGCCTTGCTTTTGTCATTTTACCATGGAAAAACCATTGGTTTAGGCCAATCAAGTATTCACTGGAGATATGCTGAGAAAATGGAAGGAACTAGCTCTTCTGGCAAAGGAAACATGTTCCTAGGCCCTTTGGTCGTAATTCTTAGCACCCTTGTTTGGGCAGCATGGTTCATAATTCAAAAAGACATAAGCAAGACATTTCCAGCTCCTTACACGAGCACTGGCTTAATGTGTTTCATGGCAAGCTTTCAATGCGTGATCATTGCCGTGTGTGTCGACCACAGGGCCTCAGCTTGGTCACTCCACAATGCTATGAGACTTTCCTCTGCCCTTTATGCGGGAATATTTTGCACTGGATTAGCCTATTGCCTCATGTCGTGGACCATTGAGAGAAAAGGTCCTCTTTATGTCTCTGTATTTACCCCTTTGCAGCTTGTCCTCACTGCCATTTTGAGCTGGGCTTTGCTTCGGGAGAAATTATATGTTGGAACTGCCGTAGGGTCTCTCTTGATAGTTTTGGGACTCTATTCTGTTCTCTGGGGAAAGAGTGAAGAGGTGAATAAGGGAGACGGTATTGAAGAAGATGCAGTTAAAGAAGCAGTCAAGGATTCGAAGAATGACATGGAATTGCAATCATATGTGCCATCCAATGGTAATAATGGTCGTGTTATTGCATGA

>Glyma19g41560.2   sequence type=CDS   gene model=Glyma19g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCCGGTCTAGTTGCGTTCCTCTTAATGGTTCTTGTGCAATTGGTCTATGCAGTGATGAACATTACTTCAAAGCTTGCAATAGAATCTGGAATGAGCCCTCTTGTCCTTGTTGCTTATCGACAACTCTTTGCTACTGTGTCCATTGCTCCCTTTGCTTATTGGCTCGAGTGGAATACGCTTCCCAGGATTACACAGCGTCTTATGATTCAGATATTATTTTCGTCCCTGACCGGAGTTACAGGAAATCAGATGCTTTATTTTGTGGGGCTGAAATATTCATCCGCTACAATTGCATGTGCACTGACAAATTTGCTCCCAGCTTTCACTTTCATCCTTGCAGTTCTCTTCAGACAAGAGAATTTGGGAATCAAGAAGAGGGCTGGTCTAGCAAAGGTATTCGGGACAATATTGTGTGTGAGTGGAGCCTTGCTTTTGTCATTTTACCATGGAAAAACCATTGGTTTAGGCCAATCAAGTATTCACTGGAGATATGCTGAGAAAATGGAAGGAACTAGCTCTTCTGGCAAAGGAAACATGTTCCTAGGCCCTTTGGTCGTAATTCTTAGCACCCTTGTTTGGGCAGCATGGTTCATAATTCAAAAAGACATAAGCAAGACATTTCCAGCTCCTTACACGAGCACTGGCTTAATGTGTTTCATGGCAAGCTTTCAATGCGTGATCATTGCCGTGTGTGTCGACCACAGGGCCTCAGCTTGGTCACTCCACAATGCTATGAGACTTTCCTCTGCCCTTTATGCGGGAATATTTTGCACTGGATTAGCCTATTGCCTCATGTCGTGGACCATTGAGAGAAAAGGTCCTCTTTATGTCTCTGTATTTACCCCTTTGCAGCTTGTCCTCACTGCCATTTTGAGCTGGGCTTTGCTTCGGGAGAAATTATATGTTGGAACTGCCGTAGGGTCTCTCTTGATAGTTTTGGGACTCTATTCTGTTCTCTGGGGAAAGAGTGAAGAGGTGAATAAGGGAGACGGTATTGAAGAAGATGCAGTTAAAGAAGCAGTCAAGGATTCGAAGAATGACATGGAATTGCAATCATATGTGCCATCCAATGGTAATAATGGTCGTGTTATTGCATGA

Predicted protein sequences of Glyma19g41560

Limit To All Plant Sequences

>Glyma19g41560.1   sequence type=predicted peptide   gene model=Glyma19g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNEFDKSTSFLFFNLSFPLRNTLPRITQRLMIQILFSSLTGVTGNQMLYFVGLKYSSATIACALTNLLPAFTFILAVLFRQENLGIKKRAGLAKVFGTILCVSGALLLSFYHGKTIGLGQSSIHWRYAEKMEGTSSSGKGNMFLGPLVVILSTLVWAAWFIIQKDISKTFPAPYTSTGLMCFMASFQCVIIAVCVDHRASAWSLHNAMRLSSALYAGIFCTGLAYCLMSWTIERKGPLYVSVFTPLQLVLTAILSWALLREKLYVGTAVGSLLIVLGLYSVLWGKSEEVNKGDGIEEDAVKEAVKDSKNDMELQSYVPSNGNNGRVIA*

>Glyma19g41560.2   sequence type=predicted peptide   gene model=Glyma19g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAGLVAFLLMVLVQLVYAVMNITSKLAIESGMSPLVLVAYRQLFATVSIAPFAYWLEWNTLPRITQRLMIQILFSSLTGVTGNQMLYFVGLKYSSATIACALTNLLPAFTFILAVLFRQENLGIKKRAGLAKVFGTILCVSGALLLSFYHGKTIGLGQSSIHWRYAEKMEGTSSSGKGNMFLGPLVVILSTLVWAAWFIIQKDISKTFPAPYTSTGLMCFMASFQCVIIAVCVDHRASAWSLHNAMRLSSALYAGIFCTGLAYCLMSWTIERKGPLYVSVFTPLQLVLTAILSWALLREKLYVGTAVGSLLIVLGLYSVLWGKSEEVNKGDGIEEDAVKEAVKDSKNDMELQSYVPSNGNNGRVIA*

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