SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G56600 | AT | Annotation by Michelle Graham. TAIR10: galactinol synthase 2 | chr1:21207620-21209291 FORWARD LENGTH=335 | SoyBase | E_val: 0 | ISS |
| GO:0006012 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactose metabolic process | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0016051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| GO:0047216 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inositol 3-alpha-galactosyltransferase activity | SoyBase | N/A | ISS |
| KOG1950 | KOG | Glycosyl transferase, family 8 - glycogenin | JGI | ISS | |
| PTHR11183 | Panther | GLYCOGENIN | JGI | ISS | |
| PTHR11183:SF2 | Panther | GLYCOGENIN-RELATED | JGI | ISS | |
| PF01501 | PFAM | Glycosyl transferase family 8 | JGI | ISS | |
| UniRef100_A0EVX3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Galactinol synthase n=1 Tax=Ammopiptanthus mongolicus RepID=A0EVX3_9FABA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NBQ6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBQ6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g41550 not represented in the dataset |
Glyma19g41550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g227800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g41550.2 sequence type=transcript gene model=Glyma19g41550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTGCAATTCAAAACAACCAACCTCTTCAGTGATCTTTGATTAGTACTAAGCTAAACCATTTCTTATTCCCTCAAAATCAAAACCTTTTTCTTTCTAGCTATTTCCCTTTTCAAATCATGCCACCTAACATCACCACCGTTGTTGCCAATGTCACCACCGAGCAATTACCCAAGGCTCGTGGAGGAAGTGGGCGTGCCTTCGTGACCTTTCTTGCTGGGAACGGTGATTACGTAAAGGGTGTCGTGGGTTTGGCCAAAGGACTGAGAAAGGCCAAAAGCATGTACCCTTTGGTGGTTGCTGTGTTACCAGATGTTCCTGAAGAACATCGTGAGATTCTCAAATCCCAAGGTTGCATTGTCAGGGAGATTGAACCTGTGTACCCTCCTGAGAACCAGACCCAGTTCGCCATGGCCTATTATGTCATCAATTACTCCAAGCTACGTATTTGGGAGTTCGTGGAGTACAAGAAGACGATATACCTAGACGGTGACATCCAAGTATTTGGAAACATAGACCACTTGTTTGATCTGCCTGATAATTATTTCTATGCGGTGATGGATTGTTTCTGCGAGAAGACTTGGAGCCACACCCCTCAGTTCCAGATTGGGTACTGCCAACAGTGCCCTGATAAGGACTTTCTCAACATGTACTTCAAGGACAAGTACAAGCCAATACCGAACATGTACAACCTTGTGCTGGCCATGTTGTGGCGTCACCCTGAAAATGTTGAACTTGATAAAGTTCAAGTGGTTCATTACTGTGCTGCTGGGTCTAAGCCTTGGAGGTTCACTGGGAAGGAAGAGAACATGGATAGGGAAGATATCAAGATGCTTGTGAAGAAGTGGTGGGACATATATGAAGATGAGACACTGGACTACAATAACAACTCTGTCAACGTGGAACGTTTCACATCGGCACTATTGGATGCTGGGGGCTTTCAGTTTGTGCCAGCACCTTCTGCTGCCTAATATGCTTATTATTTACAGCTACAAATTAATGTTAATTAACGACAAAGTATATGTATTGTTATTTGCTTTTTTTCGTTTTTGGGTCTTATATATGAAGGAACAACGTCTATGGTTTTAATTTGGATGACCTTCTTGTATACAAAGCCACATGTGATCTCATACAGCTTTTGATTATTATTAAGAAATTAGAGGACCTTTTATTATGAGTCCTTTACTTAATTTGTTTTCATTGATCAAGAG
>Glyma19g41550.1 sequence type=CDS gene model=Glyma19g41550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCACCTAACATCACCACCGTTGTTGCCAATGTCACCACCGAGCAATTACCCAAGGCTCGTGGAGGAAGTGGGCGTGCCTTCGTGACCTTTCTTGCTGGGAACGGTGATTACGTAAAGGGTGTCGTGGGTTTGGCCAAAGGACTGAGAAAGGCCAAAAGCATGTACCCTTTGGTGGTTGCTGTGTTACCAGATGTTCCTGAAGAACATCGTGAGATTCTCAAATCCCAAGGTTGCATTGTCAGGGAGATTGAACCTGTGTACCCTCCTGAGAACCAGACCCAGTTCGCCATGGCCTATTATGTCATCAATTACTCCAAGCTACGTATTTGGGAGTTCGTGGAGTACAAGAAGACGATATACCTAGACGGTGACATCCAAGTATTTGGAAACATAGACCACTTGTTTGATCTGCCTGATAATTATTTCTATGCGGTGATGGATTGTTTCTGCGAGAAGACTTGGAGCCACACCCCTCAGTTCCAGATTGGGTACTGCCAACAGTGCCCTGATAAGGTTCAATGGCCCTCTCACTTTGGTTCCAAACCTCCTCTATATTTCAATGCTGGCATGTTTGTTTATGAGCCTAATCTCGACACCTACCGTGATCTTCTCCAAACTGTCCAACTCACCAAGCCCACTTCTTTTGCTGAGCAGGACTTTCTCAACATGTACTTCAAGGACAAGTACAAGCCAATACCGAACATGTACAACCTTGTGCTGGCCATGTTGTGGCGTCACCCTGAAAATGTTGAACTTGATAAAGTTCAAGTGGTTCATTACTGTGCTGCTGGGTCTAAGCCTTGGAGGTTCACTGGGAAGGAAGAGAACATGGATAGGGAAGATATCAAGATGCTTGTGAAGAAGTGGTGGGACATATATGAAGATGAGACACTGGACTACAATAACAACTCTGTCAACGTGGAACGTTTCACATCGGCACTATTGGATGCTGGGGGCTTTCAGTTTGTGCCAGCACCTTCTGCTGCCTAA >Glyma19g41550.2 sequence type=CDS gene model=Glyma19g41550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCACCTAACATCACCACCGTTGTTGCCAATGTCACCACCGAGCAATTACCCAAGGCTCGTGGAGGAAGTGGGCGTGCCTTCGTGACCTTTCTTGCTGGGAACGGTGATTACGTAAAGGGTGTCGTGGGTTTGGCCAAAGGACTGAGAAAGGCCAAAAGCATGTACCCTTTGGTGGTTGCTGTGTTACCAGATGTTCCTGAAGAACATCGTGAGATTCTCAAATCCCAAGGTTGCATTGTCAGGGAGATTGAACCTGTGTACCCTCCTGAGAACCAGACCCAGTTCGCCATGGCCTATTATGTCATCAATTACTCCAAGCTACGTATTTGGGAGTTCGTGGAGTACAAGAAGACGATATACCTAGACGGTGACATCCAAGTATTTGGAAACATAGACCACTTGTTTGATCTGCCTGATAATTATTTCTATGCGGTGATGGATTGTTTCTGCGAGAAGACTTGGAGCCACACCCCTCAGTTCCAGATTGGGTACTGCCAACAGTGCCCTGATAAGGACTTTCTCAACATGTACTTCAAGGACAAGTACAAGCCAATACCGAACATGTACAACCTTGTGCTGGCCATGTTGTGGCGTCACCCTGAAAATGTTGAACTTGATAAAGTTCAAGTGGTTCATTACTGTGCTGCTGGGTCTAAGCCTTGGAGGTTCACTGGGAAGGAAGAGAACATGGATAGGGAAGATATCAAGATGCTTGTGAAGAAGTGGTGGGACATATATGAAGATGAGACACTGGACTACAATAACAACTCTGTCAACGTGGAACGTTTCACATCGGCACTATTGGATGCTGGGGGCTTTCAGTTTGTGCCAGCACCTTCTGCTGCCTAA
>Glyma19g41550.1 sequence type=predicted peptide gene model=Glyma19g41550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPPNITTVVANVTTEQLPKARGGSGRAFVTFLAGNGDYVKGVVGLAKGLRKAKSMYPLVVAVLPDVPEEHREILKSQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYKKTIYLDGDIQVFGNIDHLFDLPDNYFYAVMDCFCEKTWSHTPQFQIGYCQQCPDKVQWPSHFGSKPPLYFNAGMFVYEPNLDTYRDLLQTVQLTKPTSFAEQDFLNMYFKDKYKPIPNMYNLVLAMLWRHPENVELDKVQVVHYCAAGSKPWRFTGKEENMDREDIKMLVKKWWDIYEDETLDYNNNSVNVERFTSALLDAGGFQFVPAPSAA* >Glyma19g41550.2 sequence type=predicted peptide gene model=Glyma19g41550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPPNITTVVANVTTEQLPKARGGSGRAFVTFLAGNGDYVKGVVGLAKGLRKAKSMYPLVVAVLPDVPEEHREILKSQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYKKTIYLDGDIQVFGNIDHLFDLPDNYFYAVMDCFCEKTWSHTPQFQIGYCQQCPDKDFLNMYFKDKYKPIPNMYNLVLAMLWRHPENVELDKVQVVHYCAAGSKPWRFTGKEENMDREDIKMLVKKWWDIYEDETLDYNNNSVNVERFTSALLDAGGFQFVPAPSAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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