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Report for Sequence Feature Glyma19g41488

Feature Type:gene_model
Chromosome:Gm19
Start:47748278
stop:47752036
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g41488
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09270AT Annotation by Michelle Graham. TAIR10: importin alpha isoform 4 | chr1:2995162-2997833 FORWARD LENGTH=456 SoyBaseE_val: 2.00E-149ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006820GO-bp Annotation by Michelle Graham. GO Biological Process: anion transport SoyBaseN/AISS
GO:0006862GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide transport SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0015696GO-bp Annotation by Michelle Graham. GO Biological Process: ammonium transport SoyBaseN/AISS
GO:0015802GO-bp Annotation by Michelle Graham. GO Biological Process: basic amino acid transport SoyBaseN/AISS
GO:0030581GO-bp Annotation by Michelle Graham. GO Biological Process: symbiont intracellular protein transport in host SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0043269GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of ion transport SoyBaseN/AISS
GO:0080034GO-bp Annotation by Michelle Graham. GO Biological Process: host response to induction by symbiont of tumor, nodule or growth in host SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
KOG0166 KOG Karyopherin (importin) alpha JGI ISS
PTHR23316Panther IMPORTIN ALPHA-RELATED JGI ISS
PF00514PFAM Armadillo/beta-catenin-like repeat JGI ISS
PF01749PFAM Importin beta binding domain JGI ISS
UniRef100_I1NBP9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Importin subunit alpha n=1 Tax=Glycine max RepID=I1NBP9_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233E74EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E74E related cluster n=1 Tax=unknown RepID=UPI000233E74E SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g41488
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g41488 not represented in the dataset
Glyma19g41488 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g41488 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g227100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g41488
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g41488
>Glyma19g41488.1   sequence type=CDS   gene model=Glyma19g41488   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTTGGACCTGGTTCTGGTTCTGGTTCTGGTTCTGAGACGAGAAAGAAAGGCTATAAGACTGCAATTGTGGCGGAAGAGGGTAGGAGAAGGAGGGAAGAGGACCTCATCGGCATCAGAAAAAATAAACGTCGAGACGCTCTCCTCAACAAACGAAGGGTGACTCATGCTGTCCCTTCCTACGATACGTTTGAAGCTCTATCGGTTCTAACAAATTTAGCTTCCGGAACATCTGAATACAAAAGAGTTATTGTTGAACTTGGTGTTGTTCCCACCTTGGTGAATCTTCTCAGCAGCTCTAGTAGCAATAATGATATCAGAGAAGAGACAATATGCGCTTTAGGGAACATTGCTGGTGATTCCCCAAGCTATAGGGATTTTGTTCTTAGCCATGGCGCTCTATCGCCATTATTATCTCAGTTGGAACCAGAGTCATTACTTCAGTTGGAACCACATTCAGCATGGGCTATGTTGAGGCTTGCTACGTGGTGTTTATCTATCTTGGTCTGTGGATACCCTCCGGTAAATTTTGAACAGGTGAAGTCTGCCTTGCCTGTCCTTCGGCGACTCATCCACTCGACCGATGAAGAGGTTGTAGCAGATGCATGCTGGGCTCTCTCTTACCTTTCAGATGTCCCAATTAACAATATTCAAGATATTATTGAAGCAGGAGTTTGCCCAAAACTCGTGGAGCTTCTGCTGTATCCATCAGATGCAGTTATTGAACCTGCACTTAGGACTCTAAGAAATATTGTTTATGGTGATGATGCTCAGACTCAGCATGTAATTGATAGCCAACTGCTCCCGTGTCTTCACCAACTTCTTACACAAGAACACAAAAAAAACATCATTAAAGAAGCTTGTTGGACAATCTCAAATATCGCAGCTGGGAATAGAGCTCAGATACAGGCCGTCATTGATGCCAATATTATTCCTCCTCTTGTTGGTTTTCTTCTTCGTGCTGAGTTTGACATCAAGGAGGACGTTGCCTGGGCGATCTTCAATGTCACTTCTAGAGGATCTCATGACAATATCAGGTACCTTGCAGCTCAAGGTTGCATTAAGGCACTATGTGATCTGTTAAGCTATCCAGACCCAATGATTAATTCAATTTGTCTGGAGGGGCTGGAGAACATTTTAAGTGTTGGAAAAGCTGACAAGGAAATGGGACTGCATGGTAAAGGCAATATTTTTGCTCTAAGGGTTGATGAATGTGAAGGATGGGATAAGATTGAAAATTTGCTGACTCATCAGAACAATCAGATTTCTGAGAGAGCTGCGATGATTGTGGATAAATTTTGGCGAGAGAATGATTTGGAAGATATGAATGTTGACAAGAATGATGGGGATGGTAGTGATCAAGATTTATCTTTTGATTTTTAA
Predicted protein sequences of Glyma19g41488
>Glyma19g41488.1   sequence type=predicted peptide   gene model=Glyma19g41488   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLGPGSGSGSGSETRKKGYKTAIVAEEGRRRREEDLIGIRKNKRRDALLNKRRVTHAVPSYDTFEALSVLTNLASGTSEYKRVIVELGVVPTLVNLLSSSSSNNDIREETICALGNIAGDSPSYRDFVLSHGALSPLLSQLEPESLLQLEPHSAWAMLRLATWCLSILVCGYPPVNFEQVKSALPVLRRLIHSTDEEVVADACWALSYLSDVPINNIQDIIEAGVCPKLVELLLYPSDAVIEPALRTLRNIVYGDDAQTQHVIDSQLLPCLHQLLTQEHKKNIIKEACWTISNIAAGNRAQIQAVIDANIIPPLVGFLLRAEFDIKEDVAWAIFNVTSRGSHDNIRYLAAQGCIKALCDLLSYPDPMINSICLEGLENILSVGKADKEMGLHGKGNIFALRVDECEGWDKIENLLTHQNNQISERAAMIVDKFWRENDLEDMNVDKNDGDGSDQDLSFDF*






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