Glyma19g41440 - SoyBase

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Report for Sequence Feature Glyma19g41440

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47707832
stop:	47711272
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G56700	AT	Annotation by Michelle Graham. TAIR10: Peptidase C15, pyroglutamyl peptidase I-like \| chr1:21256743-21257640 FORWARD LENGTH=219	SoyBase	E_val: 9.00E-116	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG4755	KOG	Predicted pyroglutamyl peptidase	JGI		ISS
PTHR23402	Panther	PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED	JGI		ISS
PF01470	PFAM	Pyroglutamyl peptidase	JGI		ISS
UniRef100_B9RFP0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyroglutamyl-peptidase I, putative n=1 Tax=Ricinus communis RepID=B9RFP0_RICCO	SoyBase	E_val: 3.00E-133	ISS
UniRef100_I1NBP3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBP3_SOYBN	SoyBase	E_val: 9.00E-164	ISS

Expression Patterns of Glyma19g41440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41440

Paralog	Evidence	Comments
Glyma03g38860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g226600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g41440

Limit To All Plant Sequences

>Glyma19g41440.5   sequence type=transcript   gene model=Glyma19g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCCACATACATGTACTTGTATTATTTTGGTATTCGTATAAATGTTTTCCTCTTTCTCTCTTCTAAATCTAATTCGACTCTTGGCCAGTTAATAGAAACAAACTTTGGGTAGATAAGACTGCTGAATGTCTCATCTCTAATTATTGTAAGACCCTCTCTCTCTCTCTCTCTCAATCAAACTTCCGTTGCGTTTTCTCCTTCAATTTTGTTATTTTATGCCTCCTTGATCATTTGGGTGCGTGATCATCATCTTTTTCTTAATTTAATGTTGATGGGTTCTTGTGTTTACGGTTCTACTAGAATTCAGCAATGAACAAAGTGCTTTGCTTCCACCGCAACTGCTATTTATCTGAAAAGTATTTGGAAAATAGTTTTGAGTTGAGGATCTAATCATTACCAGATTTAATATATTTGACAAATGGGGTCTGAAGGTCCTACGACACCGACGACAACAATTCATGTGACAGGATTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACAGAAACAATTGCCAATAATTTGACAGAGTACATGAATAAGAAGGGTTTGCCAAAGAGATTAGTTATTGGGAGCTCCAGCATTCTTGAGACTGCTGGTCAAGGAGCACTTGTGCCACTGTACCAGAGATTACAATCCGCGGTTAATGCCAAGGACTCTGAATCTTCAAATTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGGTGCGACAAGGTTTGCTATAGAGAAACAAGCTGTCAACGAGGCTAATTTTCGATGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCCATAGTTCCTTCGGATGGTGGAATTTCACGAACAAGGGAGACTACACTTCCTGTTGTGGAGATCACCAAAGCCTTGACAGAGAAGGGATATGAAGTTATGGTATCAGATGATGCAGGCAGGTTTGTGTGCAATTATGTTTACTATCATTCCCTTCGCTTTGCCGAGCAAAACGGGATCAAATCCCTTTTCGTGCACGTGCCACTCTTCGTGACAATAAATGAAGAGACTCAAATGCAATTCGCAGCTTCCTTGTTAGAGGTGCTTGCCTCTATACCTCAGTAGTACCATTACACTTAGACCCTCAAAAGTGGGAGCCCCTATATCTCTGTTCTGGTGTGATTATGCTTATGAAAGTGGATGAATGTACCTTGAATAAAATATTTATTATAATAAAAATATTGTATTTAAATGGAAACGGTTTAATGAAAATGGCATATGTAGTAGAGGGGCATTTGCTCTCATTGGTAAATGTTTCTGATTAAAGGTTCCAGCACATTGTGATGACAGTTTGATATCTTCAGTGGTTTACCTTGTGAATAAATGTTCATTTTCTTCATTCATCAATAAAGCAGCTTATATTTAAGCATTACAACTCAACGTTTTACCACCAAACTTGGCACTCATTTGAACATGCAAAACAGAAAATAAAGACATATTGCAA

>Glyma19g41440.6   sequence type=transcript   gene model=Glyma19g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCCACATACATGTACTTGTATTATTTTGGTATTCGTATAAATGTTTTCCTCTTTCTCTCTTCTAAATCTAATTCGACTCTTGGCCAGTTAATAGAAACAAACTTTGGGTAGATAAGACTGCTGAATGTCTCATCTCTAATTATTGTATTTGGAAAATAGTTTTGAGTTGAGGATCTAATCATTACCAGATTTAATATATTTGACAAATGGGGTCTGAAGGTCCTACGACACCGACGACAACAATTCATGTGACAGGATTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACAGAAACAATTGCCAATAATTTGACAGAGTACATGAATAAGAAGGGTTTGCCAAAGAGATTAGTTATTGGGAGCTCCAGCATTCTTGAGACTGCTGGTCAAGGAGCACTTGTGCCACTGTACCAGAGATTACAATCCGCGGTTAATGCCAAGGACTCTGAATCTTCAAATTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGGTGCGACAAGGTTTGCTATAGAGAAACAAGCTGTCAACGAGGCTAATTTTCGATGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCCATAGTTCCTTCGGATGGTGGAATTTCACGAACAAGGGAGACTACACTTCCTGTTGTGGAGATCACCAAAGCCTTGACAGAGAAGGGATATGAAGTTATGGTATCAGATGATGCAGGCAGGTTTGTGTGCAATTATGTTTACTATCATTCCCTTCGCTTTGCCGAGCAAAACGGGATCAAATCCCTTTTCGTGCACGTGCCACTCTTCGTGACAATAAATGAAGAGACTCAAATGCAATTCGCAGCTTCCTTGTTAGAGGTGCTTGCCTCTATACCTCAGTAGTACCATTACACTTAGACCCTCAAAAGTGGGAGCCCCTATATCTCTGTTCTGGTGTGATTATGCTTATGAAAGTGGATGAATGTACCTTGAATAAAATATTTATTATAATAAAAATATTGTATTTAAATGGAAACGGTTTAATGAAAATGGCATATGTAGTAGAGGGGCATTTGCTCTCATTGGTAAATGTTTCTGATTAAAGGTTCCAGCACATTGTGATGACAGTTTGATATCTTCAGTGGTTTACCTTGTGAATAAATGTTCATTTTCTTCATTCATCAATAAAGCAGCTTATATTTAAGCATTACAACTCAACGTTTTACCACCAAACTTGGCACTCATTTGAACATGCAAAACAGAAAATAAAGACATATTGCAA

Coding sequences of Glyma19g41440

Limit To All Plant Sequences

>Glyma19g41440.4   sequence type=CDS   gene model=Glyma19g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCTGAAGGTCCTACGACACCGACGACAACAATTCATGTGACAGGATTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACAGAAACAATTGCCAATAATTTGACAGAGTACATGAATAAGAAGGGTTTGCCAAAGAGATTAGTTATTGGGAGCTCCAGCATTCTTGAGACTGCTGGTCAAGGAGCACTTGTGCCACTGTACCAGAGATTACAATCCGCGGTTAATGCCAAGGACTCTGAATCTTCAAATTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGGTGCGACAAGGTTTGCTATAGAGAAACAAGCTGTCAACGAGGCTAATTTTCGATGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCCATAGTTCCTTCGGATGGTGGAATTTCACGAACAAGGGAGACTACACTTCCTGTTGTGGAGATCACCAAAGCCTTGACAGAGAAGGGATATGAAGTTATGGTATCAGATGATGCAGGCAGGTTTGTGTGCAATTATGTTTACTATCATTCCCTTCGCTTTGCCGAGCAAAACGGGATCAAATCCCTTTTCGTGCACGTGCCACTCTTCGTGACAATAAATGAAGAGACTCAAATGCAATTCGCAGCTTCCTTGTTAGAGGTGCTTGCCTCTATACCTCAGTAG

>Glyma19g41440.5   sequence type=CDS   gene model=Glyma19g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCTGAAGGTCCTACGACACCGACGACAACAATTCATGTGACAGGATTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACAGAAACAATTGCCAATAATTTGACAGAGTACATGAATAAGAAGGGTTTGCCAAAGAGATTAGTTATTGGGAGCTCCAGCATTCTTGAGACTGCTGGTCAAGGAGCACTTGTGCCACTGTACCAGAGATTACAATCCGCGGTTAATGCCAAGGACTCTGAATCTTCAAATTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGGTGCGACAAGGTTTGCTATAGAGAAACAAGCTGTCAACGAGGCTAATTTTCGATGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCCATAGTTCCTTCGGATGGTGGAATTTCACGAACAAGGGAGACTACACTTCCTGTTGTGGAGATCACCAAAGCCTTGACAGAGAAGGGATATGAAGTTATGGTATCAGATGATGCAGGCAGGTTTGTGTGCAATTATGTTTACTATCATTCCCTTCGCTTTGCCGAGCAAAACGGGATCAAATCCCTTTTCGTGCACGTGCCACTCTTCGTGACAATAAATGAAGAGACTCAAATGCAATTCGCAGCTTCCTTGTTAGAGGTGCTTGCCTCTATACCTCAGTAG

>Glyma19g41440.6   sequence type=CDS   gene model=Glyma19g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCTGAAGGTCCTACGACACCGACGACAACAATTCATGTGACAGGATTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACAGAAACAATTGCCAATAATTTGACAGAGTACATGAATAAGAAGGGTTTGCCAAAGAGATTAGTTATTGGGAGCTCCAGCATTCTTGAGACTGCTGGTCAAGGAGCACTTGTGCCACTGTACCAGAGATTACAATCCGCGGTTAATGCCAAGGACTCTGAATCTTCAAATTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGGTGCGACAAGGTTTGCTATAGAGAAACAAGCTGTCAACGAGGCTAATTTTCGATGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCCATAGTTCCTTCGGATGGTGGAATTTCACGAACAAGGGAGACTACACTTCCTGTTGTGGAGATCACCAAAGCCTTGACAGAGAAGGGATATGAAGTTATGGTATCAGATGATGCAGGCAGGTTTGTGTGCAATTATGTTTACTATCATTCCCTTCGCTTTGCCGAGCAAAACGGGATCAAATCCCTTTTCGTGCACGTGCCACTCTTCGTGACAATAAATGAAGAGACTCAAATGCAATTCGCAGCTTCCTTGTTAGAGGTGCTTGCCTCTATACCTCAGTAG

Predicted protein sequences of Glyma19g41440

Limit To All Plant Sequences

>Glyma19g41440.4   sequence type=predicted peptide   gene model=Glyma19g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEGPTTPTTTIHVTGFKKFHGVSENPTETIANNLTEYMNKKGLPKRLVIGSSSILETAGQGALVPLYQRLQSAVNAKDSESSNSNKIIWLHFGVNSGATRFAIEKQAVNEANFRCPDEMGWKPQKVPIVPSDGGISRTRETTLPVVEITKALTEKGYEVMVSDDAGRFVCNYVYYHSLRFAEQNGIKSLFVHVPLFVTINEETQMQFAASLLEVLASIPQ*

>Glyma19g41440.5   sequence type=predicted peptide   gene model=Glyma19g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEGPTTPTTTIHVTGFKKFHGVSENPTETIANNLTEYMNKKGLPKRLVIGSSSILETAGQGALVPLYQRLQSAVNAKDSESSNSNKIIWLHFGVNSGATRFAIEKQAVNEANFRCPDEMGWKPQKVPIVPSDGGISRTRETTLPVVEITKALTEKGYEVMVSDDAGRFVCNYVYYHSLRFAEQNGIKSLFVHVPLFVTINEETQMQFAASLLEVLASIPQ*

>Glyma19g41440.6   sequence type=predicted peptide   gene model=Glyma19g41440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEGPTTPTTTIHVTGFKKFHGVSENPTETIANNLTEYMNKKGLPKRLVIGSSSILETAGQGALVPLYQRLQSAVNAKDSESSNSNKIIWLHFGVNSGATRFAIEKQAVNEANFRCPDEMGWKPQKVPIVPSDGGISRTRETTLPVVEITKALTEKGYEVMVSDDAGRFVCNYVYYHSLRFAEQNGIKSLFVHVPLFVTINEETQMQFAASLLEVLASIPQ*

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