Glyma19g41380 - SoyBase

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Report for Sequence Feature Glyma19g41380

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47651439
stop:	47658750
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09450	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr1:3049066-3052858 FORWARD LENGTH=599	SoyBase	E_val: 0	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0016458	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0035407	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-T11 phosphorylation	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0051225	GO-bp	Annotation by Michelle Graham. GO Biological Process: spindle assembly	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0072355	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-T3 phosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0035402	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone kinase activity (H3-T11 specific)	SoyBase	N/A	ISS
GO:0072354	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone kinase activity (H3-T3 specific)	SoyBase	N/A	ISS
KOG2464	KOG	Serine/threonine kinase (haspin family)	JGI		ISS
PTHR24419	Panther	INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE	JGI		ISS
PTHR24419:SF203	Panther		JGI		ISS
PF12330	PFAM	Domain of unknown function (DUF3635)	JGI		ISS
UniRef100_G7KWG0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase haspin n=1 Tax=Medicago truncatula RepID=G7KWG0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E748	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E748 related cluster n=1 Tax=unknown RepID=UPI000233E748	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g41380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g41380 not represented in the dataset	Glyma19g41380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41380

Paralog	Evidence	Comments
Glyma03g38780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g226000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g41380

Limit To All Plant Sequences

>Glyma19g41380.3   sequence type=transcript   gene model=Glyma19g41380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGAGGCATTGATTGATGCGATGGGAATTAAACCCTGTACGAATGAGTCGGTGAAGAAGCAAAAGCGTAAACATGAGCAGCAACTCCGGAGCAGTTAAGGGAAGAGAATTCCCTCTTCCTCGCTGCCCCTGCCCCTCCTCAAATTCAAATGCCCCTTCCCTTGATCTCTGGTCACAAATCGTTGCCGCTGAAACGCCCCGCCCCGAACGAATCGACGTCGTTTACCGGAGAAGACACCCTCGCAATCCTCAAAACCACGCCAACTCAAAGCCTCCCGATTCTGCTATACCGCGCCCGCCTCGGCAGAGTTTGGCCGATCCAAACAAGCGAGTCAGTTGGAACCGTTCTCTTTCCACCCGAGGGAGGACAAGTATAGCCGTTGGGGCTTTTATGGTATACCAGCCTCAGTTGAAGAAGGACAAAAGGAAAGGAAAACCCGCTCTTCCCAAAGGAAAGGTTGTGCAACCTCCAAACGTTGACAAGGAGAGGATATACTTTCAAGAGGTTGATGCTTATGAGTTGTTGGAGGAAAGCCCCTCCCCCAAGAAAAGCACATGGACCATAGGAAATATGACACAACAGGAACCAATTCCAGCTGTATGCTCCAGATTAGAAAAATGGTTGCACTCTAGAAGGTTAAACCCCTTCTGCGGTCCATCTAGCACACTATCGAAGATACTGGATACTCCTTCCACACGTTTGGAAACTATTCGTGACATTGACTTCGGTGCTTCTGACTTGAAAACATTGGAACGAACTGACCGAAGCAATTCTCTTCTGCATACCATCAAAACTGAGGAGAAGGAAACTTCTATTGAGAATGGCAGTCATTTGCAAACAAATGAAAAGATGCTGTTTGCTCAAAGTGGTGAAGGATGTGAAGATATTGAAGCTGGTGTTAAGAAACTTTCTCTGGTATCAACGTCATCTTCAATAGATGATGACCACATTAATCCATTTTCTGTTTTATTATCGATTTGTGGACAGTCTGCACCTTCAGTGTTACAAGATATTTTCTCTAGGGGAAATATACTTGTGGGCCGAAGTGATTCTGAAACGTTGCAGTTCACTCTCGATGGCAAGACTATGTTGGTCAAAACTCATGGATTAATAATATCTATTATTGACTTCACTTTATCAAGAATAAACACAGGTGATAGCATACTGTATTTAGATCTTTCCTCTGATCCTGACCTATTTAAAGGACCGAAAGGGGACAAACAGTCAGAAACATATCGGAGGATGAAGGAGGTGACTGAAGATTGGTGGGAAGGAAGCTGTCCTAAAACAAACGTGTTATGGTTGATCTACTTGGTAGACATACTCCTCATGAAGAAATCATTTGAACGTACTACGAAGCACGAGAGAGATCTACGATCCTTGAAGAAACGTCTTGACAAGTATGATTCGGCCAAGGAAGCAATTCTTGATCCCTTCTTCACTGATTTGTTCGTTGAGTCTGACCCAAACTTAACAATCTAAAGCTCCTTTTCCCACCTAACATGGCATTTTGTCAAAACTTTACTCGACTTTCTTGCATCTTTGGAGGCAGCTTTACTCCATTGTTCAACTTGATCCGTACAAGGTGAATTTTGTTTTTGCCAAGTTAAAATATTAATGTATAGATCGAAGTGTGATAACTGAATATATAGCTGCAAAACTTCTACAGCAATGCAGGTTAATTGTGATAATTTCTTCTGTATATTTTTCCTAGTTAATGTTATCACATTTTAATTTTAATGTTTATA

Coding sequences of Glyma19g41380

Limit To All Plant Sequences

>Glyma19g41380.2   sequence type=CDS   gene model=Glyma19g41380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAGCAACTCCGGAGCAGTTAAGGGAAGAGAATTCCCTCTTCCTCGCTGCCCCTGCCCCTCCTCAAATTCAAATGCCCCTTCCCTTGATCTCTGGTCACAAATCGTTGCCGCTGAAACGCCCCGCCCCGAACGAATCGACGTCGTTTACCGGAGAAGACACCCTCGCAATCCTCAAAACCACGCCAACTCAAAGCCTCCCGATTCTGCTATACCGCGCCCGCCTCGGCAGAGTTTGGCCGATCCAAACAAGCGAGTCAGTTGGAACCGTTCTCTTTCCACCCGAGGGAGGACAAGTATAGCCGTTGGGGCTTTTATGGTATACCAGCCTCAGTTGAAGAAGGACAAAAGGAAAGGAAAACCCGCTCTTCCCAAAGGAAAGGTTGTGCAACCTCCAAACGTTGACAAGGAGAGGATATACTTTCAAGAGGTTGATGCTTATGAGTTGTTGGAGGAAAGCCCCTCCCCCAAGAAAAGCACATGGACCATAGGAAATATGACACAACAGGAACCAATTCCAGCTGTATGCTCCAGATTAGAAAAATGGTTGCACTCTAGAAGGTTAAACCCCTTCTGCGGTCCATCTAGCACACTATCGAAGATACTGGATACTCCTTCCACACGTTTGGAAACTATTCGTGACATTGACTTCGGTGCTTCTGACTTGAAAACATTGGAACGAACTGACCGAAGCAATTCTCTTCTGCATACCATCAAAACTGAGGAGAAGGAAACTTCTATTGAGAATGGCAGTCATTTGCAAACAAATGAAAAGATGCTGTTTGCTCAAAGTGGTGAAGGATGTGAAGATATTGAAGCTGGTGTTAAGAAACTTTCTCTGGTATCAACGTCATCTTCAATAGATGATGACCACATTAATCCATTTTCTGTTTTATTATCGATTTGTGGACAGTCTGCACCTTCAGTGTTACAAGATATTTTCTCTAGTGGCTCAGAAACTATTGTGAAAGTTGGTGAAGGAACATATGGAGAAGCTTTCAAGATTAACAATTATGTCTGCAAAATAGTTCCTTTTGATGGGGAATTCAGAGTGAATGGGGAAGTCCAAAAGAGATCCGAAGAATTGCTGGAGGAAGTGCTTCTTTGCAAAACTCTCAATCAATTGAGAGGAAAAGATGGAGATTCTGATAATCTTTGCAGCGCATTCATAGATTGCATAGAATTTAGAGTATGTCAGGGCCCTTATGATGCGTCTCTAATTCAAGCATGGGAAGATTGGGATCTTGAGCATGGCTCAGAGAATGATCACCCAAAAGAGTTCCCAGATAAACAGTGTTATGTGGTGTTCGTACAAGAACATGGTGGCAAGGATCTTGAAAGTTTTGCACTCCTGAATTTTGACGAGGCAAGGGCTTTACTGGTTCAGGTTACGGCTGGGCTTGCTGTGGCTGAGTCTGCGTTTGAATTTGAACATCGAGATCTTCACTGGGGAAATATACTTGTGGGCCGAAGTGATTCTGAAACGTTGCAGTTCACTCTCGATGGCAAGACTATGTTGGTCAAAACTCATGGATTAATAATATCTATTATTGACTTCACTTTATCAAGAATAAACACAGGTGATAGCATACTGTATTTAGATCTTTCCTCTGATCCTGACCTATTTAAAGGACCGAAAGGGGACAAACAGTCAGAAACATATCGGAGGATGAAGGAGGTGACTGAAGATTGGTGGGAAGGAAGCTGTCCTAAAACAAACGTGTTATGGTTGATCTACTTGGTAGACATACTCCTCATGAAGAAATCATTTGAACGTACTACGAAGCACGAGAGAGATCTACGATCCTTGAAGAAACGTCTTGACAAGTATGATTCGGCCAAGGAAGCAATTCTTGATCCCTTCTTCACTGATTTGTTCGTTGAGTCTGACCCAAACTTAACAATCTAA

>Glyma19g41380.3   sequence type=CDS   gene model=Glyma19g41380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAGCAACTCCGGAGCAGTTAAGGGAAGAGAATTCCCTCTTCCTCGCTGCCCCTGCCCCTCCTCAAATTCAAATGCCCCTTCCCTTGATCTCTGGTCACAAATCGTTGCCGCTGAAACGCCCCGCCCCGAACGAATCGACGTCGTTTACCGGAGAAGACACCCTCGCAATCCTCAAAACCACGCCAACTCAAAGCCTCCCGATTCTGCTATACCGCGCCCGCCTCGGCAGAGTTTGGCCGATCCAAACAAGCGAGTCAGTTGGAACCGTTCTCTTTCCACCCGAGGGAGGACAAGTATAGCCGTTGGGGCTTTTATGGTATACCAGCCTCAGTTGAAGAAGGACAAAAGGAAAGGAAAACCCGCTCTTCCCAAAGGAAAGGTTGTGCAACCTCCAAACGTTGACAAGGAGAGGATATACTTTCAAGAGGTTGATGCTTATGAGTTGTTGGAGGAAAGCCCCTCCCCCAAGAAAAGCACATGGACCATAGGAAATATGACACAACAGGAACCAATTCCAGCTGTATGCTCCAGATTAGAAAAATGGTTGCACTCTAGAAGGTTAAACCCCTTCTGCGGTCCATCTAGCACACTATCGAAGATACTGGATACTCCTTCCACACGTTTGGAAACTATTCGTGACATTGACTTCGGTGCTTCTGACTTGAAAACATTGGAACGAACTGACCGAAGCAATTCTCTTCTGCATACCATCAAAACTGAGGAGAAGGAAACTTCTATTGAGAATGGCAGTCATTTGCAAACAAATGAAAAGATGCTGTTTGCTCAAAGTGGTGAAGGATGTGAAGATATTGAAGCTGGTGTTAAGAAACTTTCTCTGGTATCAACGTCATCTTCAATAGATGATGACCACATTAATCCATTTTCTGTTTTATTATCGATTTGTGGACAGTCTGCACCTTCAGTGTTACAAGATATTTTCTCTAGGGGAAATATACTTGTGGGCCGAAGTGATTCTGAAACGTTGCAGTTCACTCTCGATGGCAAGACTATGTTGGTCAAAACTCATGGATTAATAATATCTATTATTGACTTCACTTTATCAAGAATAAACACAGGTGATAGCATACTGTATTTAGATCTTTCCTCTGATCCTGACCTATTTAAAGGACCGAAAGGGGACAAACAGTCAGAAACATATCGGAGGATGAAGGAGGTGACTGAAGATTGGTGGGAAGGAAGCTGTCCTAAAACAAACGTGTTATGGTTGATCTACTTGGTAGACATACTCCTCATGAAGAAATCATTTGAACGTACTACGAAGCACGAGAGAGATCTACGATCCTTGAAGAAACGTCTTGACAAGTATGATTCGGCCAAGGAAGCAATTCTTGATCCCTTCTTCACTGATTTGTTCGTTGAGTCTGACCCAAACTTAACAATCTAA

Predicted protein sequences of Glyma19g41380

Limit To All Plant Sequences

>Glyma19g41380.2   sequence type=predicted peptide   gene model=Glyma19g41380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNSGAVKGREFPLPRCPCPSSNSNAPSLDLWSQIVAAETPRPERIDVVYRRRHPRNPQNHANSKPPDSAIPRPPRQSLADPNKRVSWNRSLSTRGRTSIAVGAFMVYQPQLKKDKRKGKPALPKGKVVQPPNVDKERIYFQEVDAYELLEESPSPKKSTWTIGNMTQQEPIPAVCSRLEKWLHSRRLNPFCGPSSTLSKILDTPSTRLETIRDIDFGASDLKTLERTDRSNSLLHTIKTEEKETSIENGSHLQTNEKMLFAQSGEGCEDIEAGVKKLSLVSTSSSIDDDHINPFSVLLSICGQSAPSVLQDIFSSGSETIVKVGEGTYGEAFKINNYVCKIVPFDGEFRVNGEVQKRSEELLEEVLLCKTLNQLRGKDGDSDNLCSAFIDCIEFRVCQGPYDASLIQAWEDWDLEHGSENDHPKEFPDKQCYVVFVQEHGGKDLESFALLNFDEARALLVQVTAGLAVAESAFEFEHRDLHWGNILVGRSDSETLQFTLDGKTMLVKTHGLIISIIDFTLSRINTGDSILYLDLSSDPDLFKGPKGDKQSETYRRMKEVTEDWWEGSCPKTNVLWLIYLVDILLMKKSFERTTKHERDLRSLKKRLDKYDSAKEAILDPFFTDLFVESDPNLTI*

>Glyma19g41380.3   sequence type=predicted peptide   gene model=Glyma19g41380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNSGAVKGREFPLPRCPCPSSNSNAPSLDLWSQIVAAETPRPERIDVVYRRRHPRNPQNHANSKPPDSAIPRPPRQSLADPNKRVSWNRSLSTRGRTSIAVGAFMVYQPQLKKDKRKGKPALPKGKVVQPPNVDKERIYFQEVDAYELLEESPSPKKSTWTIGNMTQQEPIPAVCSRLEKWLHSRRLNPFCGPSSTLSKILDTPSTRLETIRDIDFGASDLKTLERTDRSNSLLHTIKTEEKETSIENGSHLQTNEKMLFAQSGEGCEDIEAGVKKLSLVSTSSSIDDDHINPFSVLLSICGQSAPSVLQDIFSRGNILVGRSDSETLQFTLDGKTMLVKTHGLIISIIDFTLSRINTGDSILYLDLSSDPDLFKGPKGDKQSETYRRMKEVTEDWWEGSCPKTNVLWLIYLVDILLMKKSFERTTKHERDLRSLKKRLDKYDSAKEAILDPFFTDLFVESDPNLTI*

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