Glyma19g41371 - SoyBase

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Report for Sequence Feature Glyma19g41371

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47645303
stop:	47648640
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41371

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30933	AT	Annotation by Michelle Graham. TAIR10: Carbohydrate-binding X8 domain superfamily protein \| chr2:13164179-13166517 REVERSE LENGTH=227	SoyBase	E_val: 3.00E-41	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR16631	Panther	GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED	JGI		ISS
PTHR16631:SF1	Panther	GLUCAN 1,3-BETA-GLUCOSIDASE	JGI		ISS
PF07983	PFAM	X8 domain	JGI		ISS
UniRef100_B9RFQ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9RFQ4_RICCO	SoyBase	E_val: 4.00E-96	ISS
UniRef100_UPI00023375B6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023375B6 related cluster n=1 Tax=unknown RepID=UPI00023375B6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g41371

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g41371 not represented in the dataset	Glyma19g41371 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41371

Paralog	Evidence	Comments
Glyma03g38770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41371 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g225900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41371

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g41371

Limit To All Plant Sequences

>Glyma19g41371.1   sequence type=CDS   gene model=Glyma19g41371   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAGGAACCTTCTCTATGCCTCTTGTTCCTCTCTTTTCTCCTTTTCTGCTCTTCTGGGACTACTGCATCTTCATCATCTGCTGCTACTACATTCTTCCAGAAAAGCAAGATCTCTAAATCTGAGATTCGGTTTTCTGTATCTGATTACAAGTTTTTGAGCACTCTCACCAACACCAACCTGTCAGTTGATTTCTTCTTAAATGAAAGCCTGGTTGAAAATTTTGTTTCTTCAAAATCAAAATCATCTCTGGTTTCATGGCTAGAAACTCGTCTTTTGAACATTTTTCCACAAGTAGACATCAGAAGCATCGTTGTTAGATGTGGCAGTGAGTGCTTACGCCCAGATGAGATGCCTTTGCTCATACCTGTTCTCAAATCAATTCATTCATTTCTCAGCAATCTTCAACTAAGCAGGGAAACTAAAGTCTCCGTGGCTTTTCCACTTTCATTCTTAGAGAATTTGAATGCATCATATGAGAGTGATCTCCTTAGGATTGTTATGTTTTTGAATAAAATAGATTCATTTGTCTTGATAGAAGACATCATTGATGGGGAATCGAGCACTTTTCAGTCTGTTATTGAAAGAGCCACCCTTGCTGCTGCTATTCTTCCCTGCAAAGATGTTCCTGTGGTTTTCACAATCAAGAGCCATGATATTCCAAGTTCAATGGAATTAGCTCAATTTACTGAGGCAGTATCCAAATATCTTGAAGCAGTTTCTCATTTTACAAAGAGAATAGTTGCATTCTATGCACAAGTACGCACAACCAATGATTTTGTACTACTCAAAAAAGAAGAGGGAGAAGAGATATTTCCTTTGTTCCTAAGAGAAAATCCAAGCAAAGTCCACATCAGAAGAACTCTACAAGACACAACCAACTCACCAACCCCACCTTCACCAGTAATCACACCTCCAGATACACCAACCATCATCACAGTTCCTTCCACCAATCCTGTCACAGTTTCCCCCACCAATCCAGCTTCAACACCTGTCACAGTTCCTTCTACCACACCAATTGTTCCCTTAGCCCCTACAAATCCAGCCAATCCAGTTACCAACCCTGTGACCTCTTCTTATCCACCACCATCATCAGGAAGTGTTCCTGTCACAAGTGCACTGCCTCCTCCTCCAAGCACAAATGCTCAAGCCATGCCAGGGGGGCAGAGTTGGTGTGTGGCAAAGACTGGAGTTCCACAAGCGTCTCTTCAATCAGCACTGGACTATGCTTGTGGAATGTCAGGTGTGGATTGTTCACAGATACAGCAAGGTGGGAGTTGTTACAATCCAAATTCATTACAAAACCATGCTTCTTTTGCCTTCAACAACTACTACCAAAAGAATCCTGCGCCAACAAGCTGTGACTTTGGAGGCACTGCCACCATAGTGAACACCAATCCGAGCTCGGGTTCTTGCATCTACCCATCATCTTCAGGGGCAGGCACATCCGGCTCTGGTACTGGTAGCCCAGTTTTAGGGTCCCAAAGCCCTCCTGATTTAAATACCTCCTATTCGGCTAGTCTGAGACCTTTTCTTGGCTGCATGGTTCTGGCAATATCATTAGTCACTGCAAGACTCACTGCATGA

Predicted protein sequences of Glyma19g41371

Limit To All Plant Sequences

>Glyma19g41371.1   sequence type=predicted peptide   gene model=Glyma19g41371   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKEPSLCLLFLSFLLFCSSGTTASSSSAATTFFQKSKISKSEIRFSVSDYKFLSTLTNTNLSVDFFLNESLVENFVSSKSKSSLVSWLETRLLNIFPQVDIRSIVVRCGSECLRPDEMPLLIPVLKSIHSFLSNLQLSRETKVSVAFPLSFLENLNASYESDLLRIVMFLNKIDSFVLIEDIIDGESSTFQSVIERATLAAAILPCKDVPVVFTIKSHDIPSSMELAQFTEAVSKYLEAVSHFTKRIVAFYAQVRTTNDFVLLKKEEGEEIFPLFLRENPSKVHIRRTLQDTTNSPTPPSPVITPPDTPTIITVPSTNPVTVSPTNPASTPVTVPSTTPIVPLAPTNPANPVTNPVTSSYPPPSSGSVPVTSALPPPPSTNAQAMPGGQSWCVAKTGVPQASLQSALDYACGMSGVDCSQIQQGGSCYNPNSLQNHASFAFNNYYQKNPAPTSCDFGGTATIVNTNPSSGSCIYPSSSGAGTSGSGTGSPVLGSQSPPDLNTSYSASLRPFLGCMVLAISLVTARLTA*

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