Glyma19g41320 - SoyBase

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Report for Sequence Feature Glyma19g41320

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47621777
stop:	47626775
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11910	AT	Annotation by Michelle Graham. TAIR10: aspartic proteinase A1 \| chr1:4017119-4019874 REVERSE LENGTH=506	SoyBase	E_val: 0	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0048513	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ development	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG1339	KOG	Aspartyl protease	JGI		ISS
PTHR13683	Panther	ASPARTYL PROTEASES	JGI		ISS
PTHR13683:SF85	Panther	gb def: cg10104-pa [drosophila melanogaster]	JGI		ISS
PF00026	PFAM	Eukaryotic aspartyl protease	JGI		ISS
PF03489	PFAM	Saposin-like type B, region 2	JGI		ISS
PF05184	PFAM	Saposin-like type B, region 1	JGI		ISS
UniRef100_I1NBM7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NBM7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q948P0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase 2 n=1 Tax=Glycine max RepID=Q948P0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g41320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41320

Paralog	Evidence	Comments
Glyma03g38730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g225500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g41320

Limit To All Plant Sequences

>Glyma19g41320.4   sequence type=transcript   gene model=Glyma19g41320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATAGTCGTAATTAATTAGAACAGGACAAGTAGAGTGGTAGTAGTTTGTTTTGAAGCAGATATTTCCAAGGCAATTTATTTAGGATGTTTTATTTGATAATATTAATGATTTGGTTGCAGAGAGAACAAGTTACTGCTAACTAACGAATGGACATCCATTCAATTATTATTTATTCGTTACGACCTTCCACCTTTTTCTTGTGTGTGCGTTCCTAACATTATTGTTTCCTACCAAGTTCTCTGTCTGGGGAGTTCTTAGCACCACCACCAGCTTCTGCAGTAGCTTTAAGCTACGAAAGATTTTCCTTGACCATGGGGCAAAAGCATTTAGTGACGGTGTTCTGTTTATGGGCTTTAACATGTTCCCTTCTTCCATCTTTCTCCTTTGGAATTCTGAGAATTGGTTTGAAGAAGAGACCTCTAGATCTTGATAGTATTAATGCTGCTAGAAAGGCAAGAGAAGGTCTAAGATCTGTAAGACCAATGATGGGTGCACATGATCAGTTTATTGGTAAGTCAAAAGGTGAAGATATAGTACCTTTGAAGAATTATTTGGACGCTCAATATTTTGGTGAGATTGGAATTGGCACACCCCCACAGCCCTTCACTGTAGTGTTTGACACTGGGAGTTCCAACCTTTGGGTTCCATCATCAAAGTGCTACTTTACTCTTGCTTGCTATACCCATAATTGGTACACGGCTAAGAAATCAAAGACACATGTCAAAAATGGAACTTCATGTAAAATAAACTATGGAACTGGATCAATATCTGGTTTCTTCAGTCAAGATAATGTTAAAGTTGGCAGTGCTGTTGTCAAGCATCAGGATTTCATTGAGGCTACCCACGAAGGAAGTCTTACCTTTCTGTCAGCAAAGTTCGATGGAATACTGGGACTTGGATTTCAGGAGATCTCAGTTGAAAATGCTGTGCCCGTATGGTTCAAAATGGTGGAGCAAAAACTTATCAGTGAGAAGGTGTTCTCTTTTTGGCTTAATGGGGATCCGAATGCGAAAAAAGGTGGTGAATTAGTTTTTGGTGGTGTTGACCCAAAGCACTTCAAAGGAAACCACACTTATGTTCCAATTACTGAAAAAGGTTACTGGCAGATTGAAATGGGAGATTTTTTCGTTGGAGGTGTTTCAACAGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTCCTGTTGTGGCTGAAATCAACCATGCCATTGGAGCTGAAGGAGTTCTCAGTGTAGAATGTAAGGAAGTCGTTTCTCAATATGGAGAGTTGATATGGGATCTCTTGGTATCAGGGGTGAAACCAGATGACATATGTTCACAAGTTGGTTTATGTTCTTCCAAAAGGCATCAATCTAAGAGTGCTGGAATTGAAATGGTGACTGAAAAGGAACAGGAAGAGTTGGCAGCGAGAGATACTCCTTTGTGTTCTTCTTGTCAGATGCTTGTTCTTTGGATCCAGAATCAACTAAAACAAAAGGCAACGAAGGACAGAGTATTCAACTATGTGAATCAACTGTGTGAGAGCCTGCCAAGTCCATCTGGAGAGTCAGTGATAAGCTGTAATAGTCTTTCCAAGATGCCAAACATTACGTTCACAATTGGAAATAAACCTTTTGTCCTCACACCAGAGCAGTATATTCTAAGAACTGGAGAAGGCATTACAGAAGTCTGCCTTAGTGGGTTTATTGCTTTTGATGTTCCTCCTCCAAAGGGTCCATTGTGGATTCTTGGCGATGTTTTCATGAGGGCATATCACACCGTCTTTGACTATGGAAATCTCCAAGTTGGCTTTGCCGAAGCAGTCTAATTACGCTTTCTGGAGGATTTTCTTTGTAAATTTGTTAAGCGTGTTGTAAATAAGCTGTTATAATTGTAGCTCTGGTTACTTTTTGAAACCACGAATGTATTTATCCATTTAAGACGTAGAAGTATCCCACTTGCAAGTGTTGTGTGCTTTTTATATGAAAAAACCATCCTCATTTCATTCCGTGTTTGACCAAATATTGTGCCCTTTCTGTCCTTTTCAATTAGGATACTTGTAATGTGCCATACCCATGCGAAATCTTATTCTTCTTTCACCTGAGTTCCAATGGATAACTACTATTGGCATTATCTGCCAACAGAAACGAAAGGAGAATTGAAAAGGCAAAACCAATTGCAAAATGGTCGCAGAAAGGTTTTGGCTTTTCTCTTTTGTTACAGAAAGGTTTCGGCTT

Coding sequences of Glyma19g41320

Limit To All Plant Sequences

>Glyma19g41320.3   sequence type=CDS   gene model=Glyma19g41320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCAAAAGCATTTAGTGACGGTGTTCTGTTTATGGGCTTTAACATGTTCCCTTCTTCCATCTTTCTCCTTTGGAATTCTGAGAATTGGTTTGAAGAAGAGACCTCTAGATCTTGATAGTATTAATGCTGCTAGAAAGGCAAGAGAAGGTCTAAGATCTGTAAGACCAATGATGGGTGCACATGATCAGTTTATTGGTAAGTCAAAAGGTGAAGATATAGTACCTTTGAAGAATTATTTGGACGCTCAATATTTTGGTGAGATTGGAATTGGCACACCCCCACAGCCCTTCACTGTAGTGTTTGACACTGGGAGTTCCAACCTTTGGGTTCCATCATCAAAGTGCTACTTTACTCTTGCTTGCTATACCCATAATTGGTACACGGCTAAGAAATCAAAGACACATGTCAAAAATGGAACTTCATGTAAAATAAACTATGGAACTGGATCAATATCTGGTTTCTTCAGTCAAGATAATGTTAAAGTTGGCAGTGCTGTTGTCAAGCATCAGGATTTCATTGAGGCTACCCACGAAGGAAGTCTTACCTTTCTGTCAGCAAAGTTCGATGGAATACTGGGACTTGGATTTCAGGAGATCTCAGTTGAAAATGCTGTGCCCGTATGGTTCAAAATGGTGGAGCAAAAACTTATCAGTGAGAAGGTGTTCTCTTTTTGGCTTAATGGGGATCCGAATGCGAAAAAAGGTGGTGAATTAGTTTTTGGTGGTGTTGACCCAAAGCACTTCAAAGGAAACCACACTTATGTTCCAATTACTGAAAAAGGTTACTGGCAGATTGAAATGGGAGATTTTTTCGTTGGAGGTGTTTCAACAGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTCCTGTTGTGGCTGAAATCAACCATGCCATTGGAGCTGAAGGAGTTCTCAGTGTAGAATGTAAGGAAGTCGTTTCTCAATATGGAGAGTTGATATGGGATCTCTTGGTATCAGGGGTGAAACCAGATGACATATGTTCACAAGTTGGTTTATGTTCTTCCAAAAGGCATCAATCTAAGAGTGCTGGAATTGAAATGGTGACTGAAAAGGAACAGGAAGAGTTGGCAGCGAGAGATACTCCTTTGTGTTCTTCTTGTCAGATGCTTGTTCTTTGGATCCAGAATCAACTAAAACAAAAGGCAACGAAGGACAGAGTATTCAACTATGTGAATCAACTGTGTGAGAGCCTGCCAAGTCCATCTGGAGAGTCAGTGATAAGCTGTAATAGTCTTTCCAAGATGCCAAACATTACGTTCACAATTGGAAATAAACCTTTTGTCCTCACACCAGAGCAGTATATTCTAAGAACTGGAGAAGGCATTACAGAAGTCTGCCTTAGTGGGTTTATTGCTTTTGATGTTCCTCCTCCAAAGGGTCCATTGTGGATTCTTGGCGATGTTTTCATGAGGGCATATCACACCGTCTTTGACTATGGAAATCTCCAAGTTGGCTTTGCCGAAGCAGTCTAA

>Glyma19g41320.4   sequence type=CDS   gene model=Glyma19g41320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCAAAAGCATTTAGTGACGGTGTTCTGTTTATGGGCTTTAACATGTTCCCTTCTTCCATCTTTCTCCTTTGGAATTCTGAGAATTGGTTTGAAGAAGAGACCTCTAGATCTTGATAGTATTAATGCTGCTAGAAAGGCAAGAGAAGGTCTAAGATCTGTAAGACCAATGATGGGTGCACATGATCAGTTTATTGGTAAGTCAAAAGGTGAAGATATAGTACCTTTGAAGAATTATTTGGACGCTCAATATTTTGGTGAGATTGGAATTGGCACACCCCCACAGCCCTTCACTGTAGTGTTTGACACTGGGAGTTCCAACCTTTGGGTTCCATCATCAAAGTGCTACTTTACTCTTGCTTGCTATACCCATAATTGGTACACGGCTAAGAAATCAAAGACACATGTCAAAAATGGAACTTCATGTAAAATAAACTATGGAACTGGATCAATATCTGGTTTCTTCAGTCAAGATAATGTTAAAGTTGGCAGTGCTGTTGTCAAGCATCAGGATTTCATTGAGGCTACCCACGAAGGAAGTCTTACCTTTCTGTCAGCAAAGTTCGATGGAATACTGGGACTTGGATTTCAGGAGATCTCAGTTGAAAATGCTGTGCCCGTATGGTTCAAAATGGTGGAGCAAAAACTTATCAGTGAGAAGGTGTTCTCTTTTTGGCTTAATGGGGATCCGAATGCGAAAAAAGGTGGTGAATTAGTTTTTGGTGGTGTTGACCCAAAGCACTTCAAAGGAAACCACACTTATGTTCCAATTACTGAAAAAGGTTACTGGCAGATTGAAATGGGAGATTTTTTCGTTGGAGGTGTTTCAACAGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTCCTGTTGTGGCTGAAATCAACCATGCCATTGGAGCTGAAGGAGTTCTCAGTGTAGAATGTAAGGAAGTCGTTTCTCAATATGGAGAGTTGATATGGGATCTCTTGGTATCAGGGGTGAAACCAGATGACATATGTTCACAAGTTGGTTTATGTTCTTCCAAAAGGCATCAATCTAAGAGTGCTGGAATTGAAATGGTGACTGAAAAGGAACAGGAAGAGTTGGCAGCGAGAGATACTCCTTTGTGTTCTTCTTGTCAGATGCTTGTTCTTTGGATCCAGAATCAACTAAAACAAAAGGCAACGAAGGACAGAGTATTCAACTATGTGAATCAACTGTGTGAGAGCCTGCCAAGTCCATCTGGAGAGTCAGTGATAAGCTGTAATAGTCTTTCCAAGATGCCAAACATTACGTTCACAATTGGAAATAAACCTTTTGTCCTCACACCAGAGCAGTATATTCTAAGAACTGGAGAAGGCATTACAGAAGTCTGCCTTAGTGGGTTTATTGCTTTTGATGTTCCTCCTCCAAAGGGTCCATTGTGGATTCTTGGCGATGTTTTCATGAGGGCATATCACACCGTCTTTGACTATGGAAATCTCCAAGTTGGCTTTGCCGAAGCAGTCTAA

Predicted protein sequences of Glyma19g41320

Limit To All Plant Sequences

>Glyma19g41320.3   sequence type=predicted peptide   gene model=Glyma19g41320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQKHLVTVFCLWALTCSLLPSFSFGILRIGLKKRPLDLDSINAARKAREGLRSVRPMMGAHDQFIGKSKGEDIVPLKNYLDAQYFGEIGIGTPPQPFTVVFDTGSSNLWVPSSKCYFTLACYTHNWYTAKKSKTHVKNGTSCKINYGTGSISGFFSQDNVKVGSAVVKHQDFIEATHEGSLTFLSAKFDGILGLGFQEISVENAVPVWFKMVEQKLISEKVFSFWLNGDPNAKKGGELVFGGVDPKHFKGNHTYVPITEKGYWQIEMGDFFVGGVSTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKEVVSQYGELIWDLLVSGVKPDDICSQVGLCSSKRHQSKSAGIEMVTEKEQEELAARDTPLCSSCQMLVLWIQNQLKQKATKDRVFNYVNQLCESLPSPSGESVISCNSLSKMPNITFTIGNKPFVLTPEQYILRTGEGITEVCLSGFIAFDVPPPKGPLWILGDVFMRAYHTVFDYGNLQVGFAEAV*

>Glyma19g41320.4   sequence type=predicted peptide   gene model=Glyma19g41320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQKHLVTVFCLWALTCSLLPSFSFGILRIGLKKRPLDLDSINAARKAREGLRSVRPMMGAHDQFIGKSKGEDIVPLKNYLDAQYFGEIGIGTPPQPFTVVFDTGSSNLWVPSSKCYFTLACYTHNWYTAKKSKTHVKNGTSCKINYGTGSISGFFSQDNVKVGSAVVKHQDFIEATHEGSLTFLSAKFDGILGLGFQEISVENAVPVWFKMVEQKLISEKVFSFWLNGDPNAKKGGELVFGGVDPKHFKGNHTYVPITEKGYWQIEMGDFFVGGVSTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKEVVSQYGELIWDLLVSGVKPDDICSQVGLCSSKRHQSKSAGIEMVTEKEQEELAARDTPLCSSCQMLVLWIQNQLKQKATKDRVFNYVNQLCESLPSPSGESVISCNSLSKMPNITFTIGNKPFVLTPEQYILRTGEGITEVCLSGFIAFDVPPPKGPLWILGDVFMRAYHTVFDYGNLQVGFAEAV*

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