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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g41240

Feature Type:gene_model
Chromosome:Gm19
Start:47542699
stop:47548028
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G26670AT Annotation by Michelle Graham. TAIR10: Pectinacetylesterase family protein | chr5:9318456-9320816 FORWARD LENGTH=416 SoyBaseE_val: 0ISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
KOG4287 KOG Pectin acetylesterase and similar proteins JGI ISS
PTHR21562Panther NOTUM-RELATED JGI ISS
PTHR21562:SF1Panther PECTIN ACETYLESTERASE JGI ISS
PF03283PFAM Pectinacetylesterase JGI ISS
UniRef100_I1NBM1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1NBM1_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2HRU2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Notum-like protein n=1 Tax=Medicago truncatula RepID=Q2HRU2_MEDTR SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g41240 not represented in the dataset

Glyma19g41240 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g38650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g224500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g41240.1   sequence type=CDS   gene model=Glyma19g41240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATGGAGAGAGTTTTGTGGGTTGGCATTGCTATAGGACTTGTTTTCAGCAACTGGGTCGTAGGATATGAACAATATCACTTCAATGAAACAGAGTTGTCTTTATTAGAGGCTCATGAAGCTTCCTTGTCCTACGCCGGGACCGAGAGAAATAATCTTCTGCTGGTAGGACTCACCCTTATTCAAAATGCTGCTGCTAAAGGAGCAGTCTGCTTGGATGGAACATTGCCTGGTTATCATTGGCATCGGGGATATGGATCAGGAGCAAATAGCTGGCTTATTAATTTAGAGGGTGGTGGATGGTGTAATAATATTAGAACATGTGTTTATCGCAAGAAAACCCGGCGTGGATCATCAGATTTCATGGAAAAGGAGATACCTTTTACTGGAATATTAAGTAATAAGGCTGAAGAAAATCCAGATTTTTTCAATTGGAATAGAGTAAAGCTTCGTTATTGTGATGGCGCCTCATTTACTGGGGATAGTGAAGATGAGACTGCAGAACTGCAATTCAGAGGACAGCGTATTTGGGCAGCTGCAATGGAAGATTTGATGTCAAAAGGAATGCGTTTTGCCAATCAGGCTCTTCTTTCGGGATGCTCTGCGGGTGGCCTGGCTACTATTATTCATTGTGATGAATTTCGTGGTCTCTTTCCAAGGACCACCAAAGTGAAATGTCTTAGTGATGCTGGGTTGTTTCTTGATGTGATTGATGTATCTGGAGGGCATACCCTTAGGAATTTATACAGTGGTGTTGTAGGATTGCAGGGAGCACAGAAGAATCTGCCACAAATTTGTACTAATCACCTTGATCCCATCTCGTGCTTCTTTCCTCAAAACTTGATTGCCAGTGTTAAGACCCCGCTATTCATTCTTAATGCTGCTTATGATTCATGGCAGATCCAGTCCAGTTTAGCTCCTCCATCAGCAGATCCCCATGGCTATTGGCAACAATGTAGATTAAACCATGCTAAATGTACTGGACCACAAATTCAATTTCTGCAAGGATTCAGGAATCATATGCTGAATGCTATTAAATACTTCTCAAGATCAAAGCAGAATGGCTTGTTTATTAATTCTTGTTTTTCTCACTGCCAAACTGAGAGGCAGGATACATGGTTTGCTGACAATTCTCCTGTTATTAGGAACAAGGCAATTGCTCTGGCTGTTGGAGACTGGTATTTCGATCGAGCAGGTGTTAAGGCCATTGATTGTCCTTACCCTTGTGATAATACATGCCATCATCTGATTTTCAGATGA

>Glyma19g41240.1   sequence type=predicted peptide   gene model=Glyma19g41240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMERVLWVGIAIGLVFSNWVVGYEQYHFNETELSLLEAHEASLSYAGTERNNLLLVGLTLIQNAAAKGAVCLDGTLPGYHWHRGYGSGANSWLINLEGGGWCNNIRTCVYRKKTRRGSSDFMEKEIPFTGILSNKAEENPDFFNWNRVKLRYCDGASFTGDSEDETAELQFRGQRIWAAAMEDLMSKGMRFANQALLSGCSAGGLATIIHCDEFRGLFPRTTKVKCLSDAGLFLDVIDVSGGHTLRNLYSGVVGLQGAQKNLPQICTNHLDPISCFFPQNLIASVKTPLFILNAAYDSWQIQSSLAPPSADPHGYWQQCRLNHAKCTGPQIQFLQGFRNHMLNAIKYFSRSKQNGLFINSCFSHCQTERQDTWFADNSPVIRNKAIALAVGDWYFDRAGVKAIDCPYPCDNTCHHLIFR*







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