Glyma19g41230 - SoyBase

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Report for Sequence Feature Glyma19g41230

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47533375
stop:	47538270
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69850	AT	Annotation by Michelle Graham. TAIR10: nitrate transporter 1:2 \| chr1:26296945-26300407 REVERSE LENGTH=585	SoyBase	E_val: 7.00E-143	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0010119	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement	SoyBase	N/A	ISS
GO:0080168	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0090440	GO-mf	Annotation by Michelle Graham. GO Molecular Function: abscisic acid transporter activity	SoyBase	N/A	ISS
KOG1237	KOG	H+/oligopeptide symporter	JGI		ISS
PTHR11654	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PTHR11654:SF21	Panther	NITRATE TRANSPORTER (NTL1)	JGI		ISS
PF00854	PFAM	POT family	JGI		ISS
UniRef100_I1NBM0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBM0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HRU3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide transporter PTR1 n=1 Tax=Medicago truncatula RepID=Q2HRU3_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g41230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41230

Paralog	Evidence	Comments
Glyma03g38640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g224400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g41230

Limit To All Plant Sequences

>Glyma19g41230.1   sequence type=CDS   gene model=Glyma19g41230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAACCATGATGCAAAAGAAGAACAAAGGCCACTCAACCAATGGAGAAGAAGCAAAGGGGGATTCATGGCTTCCATGTTCATTTTTGTCTTGTCAGCATTGGACAACATGGGTTTTGTGGCAAACATGGTGAGCATAGTCCTATACTTTTATGGAGTGATGCACTTTGATTTGGCCAGTTCAGCCAACACCCTCACAAACTTCATGGCTTCAACCTACCTGCTTTCCCTTGTTGGAGGCTTCATCTCAGATACTTACTTGAACAGATTTACCACATGCTTGCTTTTCGGATCACTCGAGGTTCTGGCTTTGGCAATGCTCACAGTCCAAGCAGCTTCAAAACATTTACACCCTGAAGCATGTGGCAAGTCAAGCTGTGTGAAAGGTGGAATAGCAGTGATGTTCTACACATCACTGTGCTTGTTGGCATTGGGAATGGGAGGGGTGAGAGGATCCATGACTGCATTTGGAGCTGACCAATTTGATGAGAAGGATCCAACTGAGGCAAAAGCCCTTGCAAGTTTTTTCAATTGGCTTTTGCTCAGTTCAACTGTGGGAGCAATCACAGGAGTCACTGGTGTTGTGTGGGTTAGCACACAAAAAGCATGGCATTGGGGTTTTTTCATTATAACCATAGCTTCCTCTGTTGGCTTTGTGACCCTTGCTCTTGGTAAACCATTCTACCGCATCAAAACTCCAGGAGATAGCCCCACTTTGAGAATTGCTCAGGTTATTGTTGTGGCTTTTAAGAACCGTAAGTTGTCACTGCCGGAGTCACATGGAGAACTATATGAAATCAGTGATAAAGAAGCTACAGAAGAGAAGATTGCCCACACCAACCAGATGAGGTTTCTAGACAAAGCTGCCATCATCCAAGAAAACTCAAAACCCAAGGCATGGAAGGTTTGCACAGTGACACAAGTTGAAGAAGTGAAGATCCTAACAAGAGTGTTACCCATAGTAGCTAGTACCATTATACTAAACACTTGTATGGCACAACTGCAAACATTCTCAGTTCAACAAGGAAATGTGATGGACCTAAAACTTGGCTCTCTAACAGTGCCTGCACCATCCATTCCTGTTATCCCCCTTGTTTTCATAAGTGTCCTAGTTCCCTTGTATGAACTATTTTTTGTGCCATTTGCAAGAAAGATCACTCACCACCCTTCAGGCATAACACAACTACAAAGGGTTGGTGTGGGGTTAGTACTCTCGGCAATATCAATGGCAGTGGCAGGGATTGTGGAAGTGAAAAGAAGGGACCAAGGGAGAAAAGACCCTTCTAAGCCTATAAGCCTATTTTGGCTTTCATTCCAATATGGCATATTTGGCATTGCAGATATGTTCACCCTTGTGGGACTATTGGAGTTTTTCTACAGGGAATCACCTGCTAGCATGAAATCACTTTCAACCTCTCTCACGTGGCTGTCAACATCTCTTGGTTACTTCTTGAGCACAGTCTTTGTCAATGTCATCAATGCTGTTAGCAAAAGGATCACACCAAGCAAACAAGGGTGGCTGCATGGGTTCGACTTGAACCAAAATAACCTTAACTTGTTCTATTGGTTCCTTGCCACCCTTAGTTGCCTTAACTTCTTTAACTACCTCTATTGGGCCTCAAGGTACCAGTACAACGTGAAGACTCAGGCCCTGGTTTTAAACCTTTAG

Predicted protein sequences of Glyma19g41230

Limit To All Plant Sequences

>Glyma19g41230.1   sequence type=predicted peptide   gene model=Glyma19g41230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANHDAKEEQRPLNQWRRSKGGFMASMFIFVLSALDNMGFVANMVSIVLYFYGVMHFDLASSANTLTNFMASTYLLSLVGGFISDTYLNRFTTCLLFGSLEVLALAMLTVQAASKHLHPEACGKSSCVKGGIAVMFYTSLCLLALGMGGVRGSMTAFGADQFDEKDPTEAKALASFFNWLLLSSTVGAITGVTGVVWVSTQKAWHWGFFIITIASSVGFVTLALGKPFYRIKTPGDSPTLRIAQVIVVAFKNRKLSLPESHGELYEISDKEATEEKIAHTNQMRFLDKAAIIQENSKPKAWKVCTVTQVEEVKILTRVLPIVASTIILNTCMAQLQTFSVQQGNVMDLKLGSLTVPAPSIPVIPLVFISVLVPLYELFFVPFARKITHHPSGITQLQRVGVGLVLSAISMAVAGIVEVKRRDQGRKDPSKPISLFWLSFQYGIFGIADMFTLVGLLEFFYRESPASMKSLSTSLTWLSTSLGYFLSTVFVNVINAVSKRITPSKQGWLHGFDLNQNNLNLFYWFLATLSCLNFFNYLYWASRYQYNVKTQALVLNL*

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