Glyma19g41070 - SoyBase

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Report for Sequence Feature Glyma19g41070

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47390045
stop:	47391131
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g41070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02335	AT	Annotation by Michelle Graham. TAIR10: germin-like protein subfamily 2 member 2 precursor \| chr1:463979-464876 REVERSE LENGTH=219	SoyBase	E_val: 2.00E-78	ISS
GO:0010497	GO-bp	Annotation by Michelle Graham. GO Biological Process: plasmodesmata-mediated intercellular transport	SoyBase	N/A	ISS
GO:2000280	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of root development	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0030145	GO-mf	Annotation by Michelle Graham. GO Molecular Function: manganese ion binding	SoyBase	N/A	ISS
GO:0045735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity	SoyBase	N/A	ISS
PF00190	PFAM	Cupin	JGI		ISS
UniRef100_C7S8D0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Germin-like protein 16 n=1 Tax=Glycine max RepID=C7S8D0_SOYBN	SoyBase	E_val: 4.00E-92	ISS
UniRef100_UPI000233E742	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E742 related cluster n=1 Tax=unknown RepID=UPI000233E742	SoyBase	E_val: 2.00E-121	ISS

Expression Patterns of Glyma19g41070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g41070 not represented in the dataset	Glyma19g41070 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g41070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g222800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g41070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g41070

Limit To All Plant Sequences

>Glyma19g41070.2   sequence type=CDS   gene model=Glyma19g41070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATTCATACAATTTGTCGTCTCCATTGCCTACGCTTCTGATCCCGACGCACTTCAAGACCTTTGTGTCGCTTTTCCCTCCTCCAGTGTGAAGATGAATGGATTTGCATGCAAGGAGGAGGCAAATGTGACAGAAGCAGATTTCTTCTTTGCTGGGCTAGCGAATCCCGGAGTTATCAACAACGCAACGGGGTCAGTAGTCACTGCAGCCAATACTTCAAACCCACCTCACACACATCCTCGTGCCACCGAGATTCTGTTCGTGTTGGAAGGAGAACTTGACGTGGGTTTCATCACCACAGCCAACAAACTCATCTCCAAAACCGTAAAAGAAGGTGAAGTGTTTGTGTTCCCGAAAGCTTTGGTGCACTTTCAGAAGAACAATGGGGATAAGCCTGCTGCTGTTATTTCTGCGTTTGATAGCCAACTCCCTGGCACATTCTCTATAGTTGCGGTTTTGTTTAATTCTACCCCAAGTGTGCCTGATGATGTGCTCACACATGCCTTCCAGATTGATACTCAAGACGTTGACAAGATCAAGAACAGTCTTTCCTAG

Predicted protein sequences of Glyma19g41070

Limit To All Plant Sequences

>Glyma19g41070.2   sequence type=predicted peptide   gene model=Glyma19g41070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LFIQFVVSIAYASDPDALQDLCVAFPSSSVKMNGFACKEEANVTEADFFFAGLANPGVINNATGSVVTAANTSNPPHTHPRATEILFVLEGELDVGFITTANKLISKTVKEGEVFVFPKALVHFQKNNGDKPAAVISAFDSQLPGTFSIVAVLFNSTPSVPDDVLTHAFQIDTQDVDKIKNSLS*

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