SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G62080 | AT | Annotation by Michelle Graham. TAIR10: SNF7 family protein | chr3:22986383-22988517 FORWARD LENGTH=423 | SoyBase | E_val: 1.00E-140 | ISS |
| GO:0007346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2910 | KOG | Uncharacterized conserved protein predicted to be involved in protein sorting | JGI | ISS | |
| KOG2911 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR22761 | Panther | SNF7 - RELATED | JGI | ISS | |
| PF03357 | PFAM | Snf7 | JGI | ISS | |
| UniRef100_G7KUN7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Charged multivesicular body protein n=1 Tax=Medicago truncatula RepID=G7KUN7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NBJ4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NBJ4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g40990 not represented in the dataset |
Glyma19g40990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g38400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g222100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g40990.3 sequence type=transcript gene model=Glyma19g40990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAATTACCATGGGTTTTTAATGAACAAGTTTTTTATTTGTTAGCATTTAGCGTGTAGCAACGAGAAAGGATTTGGTTTAGGGGAGAAGAAAGAAAAGAAATGGGGAAAAGGAAGTGATTTGGTTTGGAAAATCAAATGGAATCAGCTACGAATTTGAGGGTTAGGGATTTCATAGCAAAGGAAGTTGCTGATTGGGACGACGAATTGATTGCAGTTGCTCGATTCAAAGCCTTTTCCGGTCAAAGATGCGATTGGGAACCCACCTTCCGCTTCTGGAAACACTTCATCATCAAAATCGCCACCCATTTTGGCCTCCTCCTCATTCGACCCTCCCAGGTCAAGAATGATTGGTTTAATCGAGGAGGGTTAACCCCTTTGTGTCTTGACGATGTACTGGTGACATCACAAGAACTGTGGATCTTGAGGATCCAACGAGCGGGCGATTCTCCCAACTAGTCAGAAGAGTGGGTAACTTGATAACAAGGCCACCGACTCCAGATATTATGGCTGAACAATGTGTTATCGTAACTGCTATGCTTAAGGATAAGGCTGCTGAAGTTGTCAAACATCTATCTGAAAGTCACTGGAATTCATCTTGTATCGTTACAATGAAGAAATTTCAGGACATGTGTGGAGGACCGGATGAGGCATCTGTAATGTTGAGGTATCTGTCTGGGTGTAGAACAGCACAGTATCTATCAGTGAATAAGAAAGATTTTTTAGAGGGGGTAAAAGTTTCTCTCTCAGCAGGAGCATTATCTAGTATCACTAATTTAGATTATGATGTACTGCACTTGATTTGGACCACTGAGAAGCTTCAGCTACAACTGGATGTGACTGATAGGCGTTATGAATTGTTGAGAAAATCAGCATTGGCTTCTCTACAATCTGGGAACAAAAAATTGGCCCTTAACTATGCAAGGGAGCTGAAGTTAGTCACCCAGAGTAGAGAAAAATGTTCATCACTTTTGAACAGAGTAGAGGAAGTACTTAGCGTTATTGCCGATGCCGAGTCAACAAAAAAGGTTACTGAAGCTATGCAGATTGGAGCCCGGGCTATTAAAGAAAATAAGATCAGCGTGGAAGATGTTGATCTTTGTTTAAGAGATATCCAAGAGAGCATTGATTCACACAAGGAAGTTGAGAATGCCCTAGAACGAATGCCGTCATATGTGGATATTGAGGATGAAGATATTGAAGAGGAATTCAAGAAGTTGGAGCTGGCTGTTGGGCAAGATGCTCAAGTTCCTGCACTGGAGAAGGCATTCAATGAAGAAGGAAGAATGGCTTCAGAAGCTGCTGATTTTATTAGTGACACTTTCTCAAATCTCAAGCTTTCAGATCGTCCAGCTGAGAAGCCAGGAATCACTCAGGCAGTGTCAGAGGGAGACAAAATAACAAAAAAATTAGAAATGGAAGCGGTGTAAGTTTGAAAATGAATATTATGGTTGTTGTGTTTTATTTCTGGCAAAATGACCTTTTTTTATTTAATGACCCATGGTTTGATTGTTAGTTATATATACATGTGATAACTATGTCCATTGTACAGTTAATGTTGCGGATAACTCTCCAATCGTTTGTGTTTTTAAATACTAGTGGAAGTAATTTGTCGCAATCCATGTCATTTTTTTTTAAAACACATTTATAC
>Glyma19g40990.2 sequence type=CDS gene model=Glyma19g40990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATCAGCTACGAATTTGAGGGTTAGGGATTTCATAGCAAAGGAAGTTGCTGATTGGGACGACGAATTGATTGCAGTTGCTCGATTCAAAGCCTTTTCCGGTCAAAGATGCGATTGGGAACCCACCTTCCGCTTCTGGAAACACTTCATCATCAAAATCGCCACCCATTTTGGCCTCCTCCTCATTCGACCCTCCCAGGTCAAGAATGATTGGTTTAATCGAGGAGGGTTAACCCCTTTGTGTCTTGACGATGTACTGTCTCTAATGTATAATGAAGGTGACATCACAAGAACTGTGGATCTTGAGGATCCAACGAGCGGGCGATTCTCCCAACTAGTCAGAAGAGTGGGTAACTTGATAACAAGGCCACCGACTCCAGATATTATGGCTGAACAATGTGTTATCGTAACTGCTATGCTTAAGGATAAGGCTGCTGAAGTTGTCAAACATCTATCTGAAAGTCACTGGAATTCATCTTGTATCGTTACAATGAAGAAATTTCAGGACATGTGTGGAGGACCGGATGAGGCATCTGTAATGTTGAGGTATCTGTCTGGGTGTAGAACAGCACAGTATCTATCAGTGAATAAGAAAGATTTTTTAGAGGGGGTAAAAGTTTCTCTCTCAGCAGGAGCATTATCTAGTATCACTAATTTAGATTATGATGTACTGCACTTGATTTGGACCACTGAGAAGCTTCAGCTACAACTGGATGTGACTGATAGGCGTTATGAATTGTTGAGAAAATCAGCATTGGCTTCTCTACAATCTGGGAACAAAAAATTGGCCCTTAACTATGCAAGGGAGCTGAAGTTAGTCACCCAGAGTAGAGAAAAATGTTCATCACTTTTGAACAGAGTAGAGGAAGTACTTAGCGTTATTGCCGATGCCGAGTCAACAAAAAAGGTTACTGAAGCTATGCAGATTGGAGCCCGGGCTATTAAAGAAAATAAGATCAGCGTGGAAGATGTTGATCTTTGTTTAAGAGATATCCAAGAGAGCATTGATTCACACAAGGAAGTTGAGAATGCCCTAGAACGAATGCCGTCATATGTGGATATTGAGGATGAAGATATTGAAGAGGAATTCAAGAAGTTGGAGCTGGCTGTTGGGCAAGATGCTCAAGTTCCTGCACTGGAGAAGGCATTCAATGAAGAAGGAAGAATGGCTTCAGAAGCTGCTGATTTTATTAGTGACACTTTCTCAAATCTCAAGCTTTCAGATCGTCCAGCTGAGAAGCCAGGAATCACTCAGGCAGTGTCAGAGGGAGACAAAATAACAAAAAAATTAGAAATGGAAGCGGTGTAA >Glyma19g40990.3 sequence type=CDS gene model=Glyma19g40990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGAACAATGTGTTATCGTAACTGCTATGCTTAAGGATAAGGCTGCTGAAGTTGTCAAACATCTATCTGAAAGTCACTGGAATTCATCTTGTATCGTTACAATGAAGAAATTTCAGGACATGTGTGGAGGACCGGATGAGGCATCTGTAATGTTGAGGTATCTGTCTGGGTGTAGAACAGCACAGTATCTATCAGTGAATAAGAAAGATTTTTTAGAGGGGGTAAAAGTTTCTCTCTCAGCAGGAGCATTATCTAGTATCACTAATTTAGATTATGATGTACTGCACTTGATTTGGACCACTGAGAAGCTTCAGCTACAACTGGATGTGACTGATAGGCGTTATGAATTGTTGAGAAAATCAGCATTGGCTTCTCTACAATCTGGGAACAAAAAATTGGCCCTTAACTATGCAAGGGAGCTGAAGTTAGTCACCCAGAGTAGAGAAAAATGTTCATCACTTTTGAACAGAGTAGAGGAAGTACTTAGCGTTATTGCCGATGCCGAGTCAACAAAAAAGGTTACTGAAGCTATGCAGATTGGAGCCCGGGCTATTAAAGAAAATAAGATCAGCGTGGAAGATGTTGATCTTTGTTTAAGAGATATCCAAGAGAGCATTGATTCACACAAGGAAGTTGAGAATGCCCTAGAACGAATGCCGTCATATGTGGATATTGAGGATGAAGATATTGAAGAGGAATTCAAGAAGTTGGAGCTGGCTGTTGGGCAAGATGCTCAAGTTCCTGCACTGGAGAAGGCATTCAATGAAGAAGGAAGAATGGCTTCAGAAGCTGCTGATTTTATTAGTGACACTTTCTCAAATCTCAAGCTTTCAGATCGTCCAGCTGAGAAGCCAGGAATCACTCAGGCAGTGTCAGAGGGAGACAAAATAACAAAAAAATTAGAAATGGAAGCGGTGTAA
>Glyma19g40990.2 sequence type=predicted peptide gene model=Glyma19g40990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESATNLRVRDFIAKEVADWDDELIAVARFKAFSGQRCDWEPTFRFWKHFIIKIATHFGLLLIRPSQVKNDWFNRGGLTPLCLDDVLSLMYNEGDITRTVDLEDPTSGRFSQLVRRVGNLITRPPTPDIMAEQCVIVTAMLKDKAAEVVKHLSESHWNSSCIVTMKKFQDMCGGPDEASVMLRYLSGCRTAQYLSVNKKDFLEGVKVSLSAGALSSITNLDYDVLHLIWTTEKLQLQLDVTDRRYELLRKSALASLQSGNKKLALNYARELKLVTQSREKCSSLLNRVEEVLSVIADAESTKKVTEAMQIGARAIKENKISVEDVDLCLRDIQESIDSHKEVENALERMPSYVDIEDEDIEEEFKKLELAVGQDAQVPALEKAFNEEGRMASEAADFISDTFSNLKLSDRPAEKPGITQAVSEGDKITKKLEMEAV* >Glyma19g40990.3 sequence type=predicted peptide gene model=Glyma19g40990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEQCVIVTAMLKDKAAEVVKHLSESHWNSSCIVTMKKFQDMCGGPDEASVMLRYLSGCRTAQYLSVNKKDFLEGVKVSLSAGALSSITNLDYDVLHLIWTTEKLQLQLDVTDRRYELLRKSALASLQSGNKKLALNYARELKLVTQSREKCSSLLNRVEEVLSVIADAESTKKVTEAMQIGARAIKENKISVEDVDLCLRDIQESIDSHKEVENALERMPSYVDIEDEDIEEEFKKLELAVGQDAQVPALEKAFNEEGRMASEAADFISDTFSNLKLSDRPAEKPGITQAVSEGDKITKKLEMEAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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