Glyma19g40980 - SoyBase

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Report for Sequence Feature Glyma19g40980

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47277877
stop:	47280850
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09530	AT	Annotation by Michelle Graham. TAIR10: phytochrome interacting factor 3 \| chr1:3077216-3079367 FORWARD LENGTH=524	SoyBase	E_val: 2.00E-29	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0009704	GO-bp	Annotation by Michelle Graham. GO Biological Process: de-etiolation	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010017	GO-bp	Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway	SoyBase	N/A	ISS
GO:0031539	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of anthocyanin metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG4304	KOG	Transcriptional repressors of the hairy/E(spl) family (contains HLH)	JGI		ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PTHR12565:SF7	Panther	CENTROMERE-BINDING PROTEIN 1, CBP-1	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7KUN6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor SPATULA n=1 Tax=Medicago truncatula RepID=G7KUN6_MEDTR	SoyBase	E_val: 3.00E-73	ISS
UniRef100_UPI000233E741	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E741 related cluster n=1 Tax=unknown RepID=UPI000233E741	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g40980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40980

Paralog	Evidence	Comments
Glyma03g38391	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g222000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g40980

Limit To All Plant Sequences

>Glyma19g40980.1   sequence type=CDS   gene model=Glyma19g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATTCAGAAGATGTTTGACTCCACCCGTTCTGGTATGACAAGAAGCTCCTCCCATGTAGCCTCCATTAATGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGATTGTTGTACGAGGAGGTTCATCATCAAACAGATCACGAAAGACAAACGAGGAAAGAATACATGAAGATGCCAGCATTAACAAAAGAACTAGGTTAAACCCATTATACTCACTTGAAGATCACTTTCTACCACAAAGGGACTCTGACATGAGCTCTTCACACCAAAGCAATAATGGCCAAGATTCGTGTCAATCCTCCCAAAGCAAGAATTCCTGCAAGCTTCATGAAGAATTTGCAAACTTACTTAAGCCCGTTACCACAGGCAATAGTCACTTACAACAGTGCTTACCTTCATCTCCGCTCAAGAAACAAAGAACCGATTCAACCCAAACACCAAGACCAGCAAAAGTGAACTTCTCCAACTTTTCAATACCTGCAGTGTTTCTCAAATCTACTACTACTACTACTACTAATAATTATCAGGGAAACAGTGCAACTCAACAGACAAAAAATCATTCATCTCCAGCAAGAGTGGAGGAGATTGAAGCGCTCAAGGTTGACAAATCAGCGAAAGAAACACAGTGTTTTCAGAAGCAAACATCATTAACTGTTGAAAGAAGCACAAAATTACCAACCCCAGCGGTTGATGAACACTCTGAAGCTGCTGGTCATAACTGTGGTGTTCTTGGAATTCACAGATCCCAAGGTCAAACCTCAACCTCAGAAGCACTTAGAGCCAAAGCAAAAGCTTATAATAATAATAATATTAACATGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCTTGGTTTCAGGAAACATGAGGACACTGATGACTCAACGTATTTAAGTGATAATGATGGAGAGCCTGAAGATATGGTAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACCCTGAGGTTCATAACTTATCTGAGAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGACCTCATTCCCAACTGTAATAAGGTGGACAAAGCATCAATGCTAGACGATGCCATCGACTATCTGAAGACCCTAAAGCTTCAGTTACAGGCAAATTTTCAGATAATGTCAATGGGAAGTGGGTTATGGCCACTCATGATGGGATTCAGGCCACCACAGCTACCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTATTCAGATGTTTGGTTCCCCAAACCAAATACCACCCATGCCAATGCCTCATGCACCTTTCTTCCCTATCATTGGAAATTCTGCCACACAATCACACTTGGCTAATAACACCACCACCACAGCTGCAGCTACCACCAACTTGGCAGAACATTTAGCTAATTCTCTACATGGAAATGCAACAAAGCTAGCGCCACCAAGTCAGATTTCCTTTCAACACCACCACACCTCTACTAGTACTCCTACACTAGCTACCCCTTTCATTTTTCCACAAAAATAG

Predicted protein sequences of Glyma19g40980

Limit To All Plant Sequences

>Glyma19g40980.1   sequence type=predicted peptide   gene model=Glyma19g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMIQKMFDSTRSGMTRSSSHVASINDNDFLELVWENGEIVVRGGSSSNRSRKTNEERIHEDASINKRTRLNPLYSLEDHFLPQRDSDMSSSHQSNNGQDSCQSSQSKNSCKLHEEFANLLKPVTTGNSHLQQCLPSSPLKKQRTDSTQTPRPAKVNFSNFSIPAVFLKSTTTTTTNNYQGNSATQQTKNHSSPARVEEIEALKVDKSAKETQCFQKQTSLTVERSTKLPTPAVDEHSEAAGHNCGVLGIHRSQGQTSTSEALRAKAKAYNNNNINMCHEPLLASSSVCSLGASNDPNLGFRKHEDTDDSTYLSDNDGEPEDMVKQDREGNRVKRSRNPEVHNLSEKKRREKINKKMRTLKDLIPNCNKVDKASMLDDAIDYLKTLKLQLQANFQIMSMGSGLWPLMMGFRPPQLPIPPLSAITDNRLIQMFGSPNQIPPMPMPHAPFFPIIGNSATQSHLANNTTTTAAATTNLAEHLANSLHGNATKLAPPSQISFQHHHTSTSTPTLATPFIFPQK*

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