Glyma19g40970 - SoyBase

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Report for Sequence Feature Glyma19g40970

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47264459
stop:	47266048
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46990	AT	Annotation by Michelle Graham. TAIR10: indole-3-acetic acid inducible 20 \| chr2:19307861-19308869 FORWARD LENGTH=175	SoyBase	E_val: 6.00E-39	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009647	GO-bp	Annotation by Michelle Graham. GO Biological Process: skotomorphogenesis	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0010588	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon vascular tissue pattern formation	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
UniRef100_G7KUN4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-responsive protein IAA4 n=1 Tax=Medicago truncatula RepID=G7KUN4_MEDTR	SoyBase	E_val: 5.00E-62	ISS
UniRef100_I1NBJ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NBJ0_SOYBN	SoyBase	E_val: 5.00E-129	ISS

Expression Patterns of Glyma19g40970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40970

Paralog	Evidence	Comments
Glyma03g38370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g221900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g40970

Limit To All Plant Sequences

>Glyma19g40970.2   sequence type=transcript   gene model=Glyma19g40970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACATTTGAGGGAAGTGGCGCTGCAGCAGAGGAAGTGGTTGATTCTACGAATAGGACCATCATCCCTTTCTTCGTTTATTTAAGGTGGCGGCTTGGTGTGCCATCATCATCTTTCTACTTCCTTTTCCCTTCATTCTCACAACAATGGGCAAACCCGCTAGTTCTTCTTCCTCCTCTATTAGCAGCACCACCAACCGTCACCTCCTCCTTTCAACCGCATCTTCTCTCACTCAAGAACTTCCCACTGATCTTAGGCTTGGACTCGGCATTTCCGCCACTCAACATTTTGCCTCTTCTATTTCAAGGGGGCAATGGCAACAATCACACCACCCTTTTGTGAACATTTATTCACAAGTTCCTGCTGAAGTGAATGATTGCAGCAACGATCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGGATTCCAATCGGAAGGAAGCTCAATATACTAGCTCATGGAGGCTACTATGAGTTAGTCAGGACTCTTGAACACATGTTTGACACTACCATTCTTTGGGGAACAGAAATGAATGGAGTGCAACCAGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTCCCTTGGGAGTAAGTTAATTGACTCTTTTTTGTTTTTTTTTCTTATCTGAGAAACAAAAGCATTATATGTTCCATTTTGTGAATTGATGTGGTATTTGTTTTGATGGTGTAGGATGTTCTTATCGACGGTGAAGAGGTTGAAGATCACAAGGGTAGACACATTCGGGTGTTAAGTGAAGAACATGACACTGCCTCTTCCTTCACCGGTGATTTTAGATTTTGTCCTCTAGAGTGAGACTCTAATGAGGTCGCTGATCAGAAAATTTAGAAAAATCTTAGTGAAGTATATGCACAGATAGGTGATGTATATGCATAGCTCACTCTGCTCTTTCTTTCAAGATAATGGAAAAAGAATAGTGTTGTATATTAATTCTTACCCATTCTGGGCTACCGGATTTATTTTCTTTCTAGAACTCAACTTCTAACTGTTAGAATTTCTCTTTTCCAACTTATTTTCCTCAATTTTAAGACTGACGCAGAGTGAGGAACGAGGAATGGAAAGAAAAATTATTATTATGTTGAGAGCAAATGAAAATATGCATTATGCCATGCCAGAGTCTTAATTTCTGTTTTTTTTTTTTTTTGCCTAGAAAGAGTAATGTTACACGCCCCCGGGGCAGAGTTAGATCTGAGATTACAACCGCATTAAGCACTTAATATTATTATAAATTGTTGTACTGTCGATTTAACAAAATGTAGAAATTTTTTC

Coding sequences of Glyma19g40970

Limit To All Plant Sequences

>Glyma19g40970.1   sequence type=CDS   gene model=Glyma19g40970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAAACCCGCTAGTTCTTCTTCCTCCTCTATTAGCAGCACCACCAACCGTCACCTCCTCCTTTCAACCGCATCTTCTCTCACTCAAGAACTTCCCACTGATCTTAGGCTTGGACTCGGCATTTCCGCCACTCAACATTTTGCCTCTTCTATTTCAAGGGGGCAATGGCAACAATCACACCACCCTTTTGTGAACATTTATTCACAAGTTCCTGCTGAAGTGAATGATTGCAGCAACGATCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGGATTCCAATCGGAAGGAAGCTCAATATACTAGCTCATGGAGGCTACTATGAGTTAGTCAGGACTCTTGAACACATGTTTGACACTACCATTCTTTGGGGAACAGAAATGAATGGAGTGCAACCAGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCGACGGTGAAGAGGTTGAAGATCACAAGGGTAGACACATTCGGGTGTTAA

>Glyma19g40970.2   sequence type=CDS   gene model=Glyma19g40970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAAACCCGCTAGTTCTTCTTCCTCCTCTATTAGCAGCACCACCAACCGTCACCTCCTCCTTTCAACCGCATCTTCTCTCACTCAAGAACTTCCCACTGATCTTAGGCTTGGACTCGGCATTTCCGCCACTCAACATTTTGCCTCTTCTATTTCAAGGGGGCAATGGCAACAATCACACCACCCTTTTGTGAACATTTATTCACAAGTTCCTGCTGAAGTGAATGATTGCAGCAACGATCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGGATTCCAATCGGAAGGAAGCTCAATATACTAGCTCATGGAGGCTACTATGAGTTAGTCAGGACTCTTGAACACATGTTTGACACTACCATTCTTTGGGGAACAGAAATGAATGGAGTGCAACCAGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTCCCTTGGGAGTAA

Predicted protein sequences of Glyma19g40970

Limit To All Plant Sequences

>Glyma19g40970.1   sequence type=predicted peptide   gene model=Glyma19g40970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKPASSSSSSISSTTNRHLLLSTASSLTQELPTDLRLGLGISATQHFASSISRGQWQQSHHPFVNIYSQVPAEVNDCSNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC*

>Glyma19g40970.2   sequence type=predicted peptide   gene model=Glyma19g40970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKPASSSSSSISSTTNRHLLLSTASSLTQELPTDLRLGLGISATQHFASSISRGQWQQSHHPFVNIYSQVPAEVNDCSNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWE*

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