Glyma19g40950 - SoyBase

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Report for Sequence Feature Glyma19g40950

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47231197
stop:	47236101
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04450	AT	Annotation by Michelle Graham. TAIR10: WRKY family transcription factor \| chr4:2218379-2221113 FORWARD LENGTH=528	SoyBase	E_val: 8.00E-94	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7KUM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7KUM9_MEDTR	SoyBase	E_val: 2.00E-155	ISS
UniRef100_I1NBI8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBI8_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma19g40950

Locus	Gene Symbol	Protein Name
	WRKY178	WRKY Transcription Factor

Expression Patterns of Glyma19g40950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g40950 not represented in the dataset	Glyma19g40950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40950

Paralog	Evidence	Comments
Glyma03g38360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g221700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g40950

Limit To All Plant Sequences

>Glyma19g40950.2   sequence type=transcript   gene model=Glyma19g40950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATAAACTACCACTTTATTTCTTCTACCTCTTCTCTCTCTGCATCTCACTAAATACATACATACATGGACAACCCACACCACCGTCAATTGACCTTCTTCCTCAGCCATAGTATAGATCACACAGATCCTCCTTCTGTCAAAGAAATGGATTTCTTCTCAACTTCATCGGCACCTGATCATAAAAATAACACTAGTACCAGTGATACCAATGATGATTATCAGAAGCGTGATGATCAACATGACACTCATGATCGCCATGGAAGCATCACCGCCGATGGATCACCAACACGCGCCACTGACCACCATGTAAACACTGGACTGAATTTAACTTGTGCAAGTGCTGGAATGACAAAATCAGACAATAGTGAAAATCCTGAAACTGAGCTGAGTTCTCTTGAAAACCAATTGGGGAAACTACAAGAAGAGAATAGCAAGTTAAGAAGTGTGCTGGACCAGATAACCAAAAACTATGCCCAACTACAAGCTCAGTTGTTCAACGCCTTGCAAAAACAAAAGCTTCCTAAGAATGTGGAAACAAAAATTGTGGACCCAGGAGCAAGCACGAAATTAGACGTGGTCAATAATGCATCGGTTTCGGATGAAAAGACTGATCAAGATGTATCGGTTTATCGTTCAAACAACGCGGAGGTAATGTCAAAAACACATGATCGTGATGACGACCCTCAATTGACTAAACTGAATCTTGGAAAGCAGGCTTGTCCTGATGCTGCAGAAGATGTTCTTGACCGGTCCTCTTCACAGAGTTGGGGATCATCCAAGTTAGAGGAACAACCCAAAACTGCAGAACAACTTCCTGCAGAACAGATTCCTCTCAGAAAAGCCAGGGTTTCCGTCCGTGCTAGATCAGAAGCTCCCATGATAAGCGATGGATGTCAGTGGAGGAAATATGGACAAAAAATGGCCAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGCACTATGGCTGTAGGATGCCCGGTCCGAAAACAGGTTCAAAGATGTGCAGATGACAAAGCAGTGTTGATAACAACCTACGAAGGCAATCACAACCACCCTTTGCCGCCGGCCGCCACCGCCATGGCAAATACTACGTCAGCAGCCGCAGCCATGCTGCTATCAGGTTCGGCAGCCCCAAGCAAGGAAGCGCTAACAAACTCTGCAGGATATTACTCTTCTTCTTCAATTCCCTATGCTTCAATGGCAACCCTATCAGCTTCAGCTCCATTCCCAACCATCACTCTCGACTTGACCCAAAACCCCAACAACGCCATGCAGCTGCACCGAGTACCAGCAGGCCATGGCGCCACGTTCCCTCTGCCACTGCATGCGGCAGCTGCTGGTCCCCACCTACTAGGTCACCCCTTGTTCTTCCAACAGAAGCTTCCACCGGCAGCATTAATGCCCCTTCTTCAACGACAACCTTCGTCGTCGATGGTCGAAACGGTTAGTGCAGCCATTGCTTCGGATCCGAACTTCACTGCAGCTTTGATGGCAGCAATCTCATCAATCATTGGAGTACCAAGAAGCAGTGATGATAATAACAATGGAAATGGTGCTATTCCAGGGTCACCACAGCTTCCTCAGTCATGCACTACTTTCTCCACCAACTAGCGGAATTTTGAGAAACTATATACTTAATTTCTCTATGTATATACACAACTTAAAAGAGAAGATTAGGCATGCGCGGTGTTTACTGTTTTTATTTACTTATATGTAAAACAGATTAATTAAGAGTCACCTCTGATTCTGAATGCATGACTCTATAAACACAAATCGTTTGAACCTCAAGTTCGACTTGCAGGAGTGTGCATGTAAGTTGATGCTTTTGGTACAATAGTCTGGATATAACTTATGTTATATACGTCACAGATTTGCAATTTAATTCCCATGTGATTTTTTTAATTAAGTATTTACGGATAAAAAATTATTATTTGGTTC

Coding sequences of Glyma19g40950

Limit To All Plant Sequences

>Glyma19g40950.1   sequence type=CDS   gene model=Glyma19g40950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACCCACACCACCGTCAATTGACCTTCTTCCTCAGCCATAGTATAGATCACACAGATCCTCCTTCTGTCAAAGAAATGGATTTCTTCTCAACTTCATCGGCACCTGATCATAAAAATAACACTAGTACCAGTGATACCAATGATGATTATCAGAAGCGTGATGATCAACATGACACTCATGATCGCCATGGAAGCATCACCGCCGATGGATCACCAACACGCGCCACTGACCACCATGTAAACACTGGACTGAATTTAACTTGTGCAAGTGCTGGAATGACAAAATCAGACAATAGTGAAAATCCTGAAACTGAGCTGAGTTCTCTTGAAAACCAATTGGGGAAACTACAAGAAGAGAATAGCAAGTTAAGAAGTGTGCTGGACCAGATAACCAAAAACTATGCCCAACTACAAGCTCAGTTGTTCAACGCCTTGCAAAAACAAAAGCTTCCTAAGAATGTGGAAACAAAAATTGTGGACCCAGGAGCAAGCACGAAATTAGACGTGGTCAATAATGCATCGGTTTCGGATGAAAAGACTGATCAAGATGTATCGGTTTATCGTTCAAACAACGCGGAGGCTTGTCCTGATGCTGCAGAAGATGTTCTTGACCGGTCCTCTTCACAGAGTTGGGGATCATCCAAGTTAGAGGAACAACCCAAAACTGCAGAACAACTTCCTGCAGAACAGATTCCTCTCAGAAAAGCCAGGGTTTCCGTCCGTGCTAGATCAGAAGCTCCCATGATAAGCGATGGATGTCAGTGGAGGAAATATGGACAAAAAATGGCCAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGCACTATGGCTGTAGGATGCCCGGTCCGAAAACAGGTTCAAAGATGTGCAGATGACAAAGCAGTGTTGATAACAACCTACGAAGGCAATCACAACCACCCTTTGCCGCCGGCCGCCACCGCCATGGCAAATACTACGTCAGCAGCCGCAGCCATGCTGCTATCAGGTTCGGCAGCCCCAAGCAAGGAAGCGCTAACAAACTCTGCAGGATATTACTCTTCTTCTTCAATTCCCTATGCTTCAATGGCAACCCTATCAGCTTCAGCTCCATTCCCAACCATCACTCTCGACTTGACCCAAAACCCCAACAACGCCATGCAGCTGCACCGAGTACCAGCAGGCCATGGCGCCACGTTCCCTCTGCCACTGCATGCGGCAGCTGCTGGTCCCCACCTACTAGGTCACCCCTTGTTCTTCCAACAGAAGCTTCCACCGGCAGCATTAATGCCCCTTCTTCAACGACAACCTTCGTCGTCGATGGTCGAAACGGTTAGTGCAGCCATTGCTTCGGATCCGAACTTCACTGCAGCTTTGATGGCAGCAATCTCATCAATCATTGGAGTACCAAGAAGCAGTGATGATAATAACAATGGAAATGGTGCTATTCCAGGGTCACCACAGCTTCCTCAGTCATGCACTACTTTCTCCACCAACTAG

>Glyma19g40950.2   sequence type=CDS   gene model=Glyma19g40950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACCCACACCACCGTCAATTGACCTTCTTCCTCAGCCATAGTATAGATCACACAGATCCTCCTTCTGTCAAAGAAATGGATTTCTTCTCAACTTCATCGGCACCTGATCATAAAAATAACACTAGTACCAGTGATACCAATGATGATTATCAGAAGCGTGATGATCAACATGACACTCATGATCGCCATGGAAGCATCACCGCCGATGGATCACCAACACGCGCCACTGACCACCATGTAAACACTGGACTGAATTTAACTTGTGCAAGTGCTGGAATGACAAAATCAGACAATAGTGAAAATCCTGAAACTGAGCTGAGTTCTCTTGAAAACCAATTGGGGAAACTACAAGAAGAGAATAGCAAGTTAAGAAGTGTGCTGGACCAGATAACCAAAAACTATGCCCAACTACAAGCTCAGTTGTTCAACGCCTTGCAAAAACAAAAGCTTCCTAAGAATGTGGAAACAAAAATTGTGGACCCAGGAGCAAGCACGAAATTAGACGTGGTCAATAATGCATCGGTTTCGGATGAAAAGACTGATCAAGATGTATCGGTTTATCGTTCAAACAACGCGGAGGTAATGTCAAAAACACATGATCGTGATGACGACCCTCAATTGACTAAACTGAATCTTGGAAAGCAGGCTTGTCCTGATGCTGCAGAAGATGTTCTTGACCGGTCCTCTTCACAGAGTTGGGGATCATCCAAGTTAGAGGAACAACCCAAAACTGCAGAACAACTTCCTGCAGAACAGATTCCTCTCAGAAAAGCCAGGGTTTCCGTCCGTGCTAGATCAGAAGCTCCCATGATAAGCGATGGATGTCAGTGGAGGAAATATGGACAAAAAATGGCCAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGCACTATGGCTGTAGGATGCCCGGTCCGAAAACAGGTTCAAAGATGTGCAGATGACAAAGCAGTGTTGATAACAACCTACGAAGGCAATCACAACCACCCTTTGCCGCCGGCCGCCACCGCCATGGCAAATACTACGTCAGCAGCCGCAGCCATGCTGCTATCAGGTTCGGCAGCCCCAAGCAAGGAAGCGCTAACAAACTCTGCAGGATATTACTCTTCTTCTTCAATTCCCTATGCTTCAATGGCAACCCTATCAGCTTCAGCTCCATTCCCAACCATCACTCTCGACTTGACCCAAAACCCCAACAACGCCATGCAGCTGCACCGAGTACCAGCAGGCCATGGCGCCACGTTCCCTCTGCCACTGCATGCGGCAGCTGCTGGTCCCCACCTACTAGGTCACCCCTTGTTCTTCCAACAGAAGCTTCCACCGGCAGCATTAATGCCCCTTCTTCAACGACAACCTTCGTCGTCGATGGTCGAAACGGTTAGTGCAGCCATTGCTTCGGATCCGAACTTCACTGCAGCTTTGATGGCAGCAATCTCATCAATCATTGGAGTACCAAGAAGCAGTGATGATAATAACAATGGAAATGGTGCTATTCCAGGGTCACCACAGCTTCCTCAGTCATGCACTACTTTCTCCACCAACTAG

Predicted protein sequences of Glyma19g40950

Limit To All Plant Sequences

>Glyma19g40950.1   sequence type=predicted peptide   gene model=Glyma19g40950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNPHHRQLTFFLSHSIDHTDPPSVKEMDFFSTSSAPDHKNNTSTSDTNDDYQKRDDQHDTHDRHGSITADGSPTRATDHHVNTGLNLTCASAGMTKSDNSENPETELSSLENQLGKLQEENSKLRSVLDQITKNYAQLQAQLFNALQKQKLPKNVETKIVDPGASTKLDVVNNASVSDEKTDQDVSVYRSNNAEACPDAAEDVLDRSSSQSWGSSKLEEQPKTAEQLPAEQIPLRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCADDKAVLITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSAAPSKEALTNSAGYYSSSSIPYASMATLSASAPFPTITLDLTQNPNNAMQLHRVPAGHGATFPLPLHAAAAGPHLLGHPLFFQQKLPPAALMPLLQRQPSSSMVETVSAAIASDPNFTAALMAAISSIIGVPRSSDDNNNGNGAIPGSPQLPQSCTTFSTN*

>Glyma19g40950.2   sequence type=predicted peptide   gene model=Glyma19g40950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNPHHRQLTFFLSHSIDHTDPPSVKEMDFFSTSSAPDHKNNTSTSDTNDDYQKRDDQHDTHDRHGSITADGSPTRATDHHVNTGLNLTCASAGMTKSDNSENPETELSSLENQLGKLQEENSKLRSVLDQITKNYAQLQAQLFNALQKQKLPKNVETKIVDPGASTKLDVVNNASVSDEKTDQDVSVYRSNNAEVMSKTHDRDDDPQLTKLNLGKQACPDAAEDVLDRSSSQSWGSSKLEEQPKTAEQLPAEQIPLRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCADDKAVLITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSAAPSKEALTNSAGYYSSSSIPYASMATLSASAPFPTITLDLTQNPNNAMQLHRVPAGHGATFPLPLHAAAAGPHLLGHPLFFQQKLPPAALMPLLQRQPSSSMVETVSAAIASDPNFTAALMAAISSIIGVPRSSDDNNNGNGAIPGSPQLPQSCTTFSTN*

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