Glyma19g40875 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g40875

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47165277
stop:	47167976
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40875

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G13600	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr2:5671493-5673586 FORWARD LENGTH=697	SoyBase	E_val: 2.00E-105	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0080156	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial mRNA modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7KTN8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7KTN8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7KTN8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7KTN8_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g40875

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g40875 not represented in the dataset	Glyma19g40875 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40875

Paralog	Evidence	Comments
Glyma03g38270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40875 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g220900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40875

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g40875

Limit To All Plant Sequences

>Glyma19g40875.1   sequence type=CDS   gene model=Glyma19g40875   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTTGCGTGAATAGATTATTGTCGCGGACGCCATGTTCCTTCCCCCGCAACATGTGTACGGTTACATCCGCAAAGCTTAACTACATGATCGACGCTTACATACAAGGCAACAACATAAACAATGCTCGAAAACTGTTTGACGAAAACCCCTCGTCCCGCAACCTCGTATCCTGGAACATGATGATGACTGGTTACGTCAAACACCATCAAATTCAATATGCCCAGTACCTGTTCGATCAAATGCCCTTCAAAGACACGGTTTCTTGGAATATCATGCTCTCTGGTTTTCACAGAATCACAAACTCTGATGGGTTGTACCGCTGTTTCTTGCAAATGGGAAGAGCTGGTGTGCCCCCCGATGACTATACCGTCTCCACATTGCTCAGAGCGGTTATAAGCACCGAGTTAGATGTTTTGATCCCCCAGCTTCACGCTCGAGCGCTGCATTTAGCACTTAACTTGAGTGTGTTTGTTGGGTCTTCGTTGATCAGAGCTTATGCCAGTTTAAGAGACGAGGAGGCTTTTAAGCAAGCGTTTGATGATATATTGGGGAAAGATGTCACGTCTTGGAATGCTTTGGTTTCTGGTTATATGGAAGTGGGAAGTATGGATGATGCTCAAACAACCTTTGATATGATGATGCCTGAGAAAAACATAATTTCATGGACTACTTTGGTGAATGGTTATATCAGGAACAAGAGGATAAACAAAGCAAGGTCTGTTTTTAACAAAATGAGCGAGAGGAATGTGGTGTCTTGGACGGCAATGATTAGTGGGTATGTGCAAAATAAGAGATTTATGGATGCTTTGAATCTTTTTCTTCTGATGTTTAATTCGGGAACTTGTCCCAATCATTTCACGTTCTCAAGTGTGTTGGACGCATGTGCTGGTTGTTCATCCCTTTTGACAGGAATGCAGGTGCACCTGTGCGTTATCAAGTCTGGCATACCAGAGGATGTCATCTCATTGACCTCGCTTGTGGATATGTATGCAAAATGCGGGGATATGGATGCAGCATTTCGTGTTTTTGAGTCCATTCCGAATAAGAATTTGGTGTCATGGAATTCAATAATTGGTGGCTGTGCCAGGAATGGAATAGCTACCCGAGCACTGGAGGAGTTTGATAGGATGAAAAAAGCTGGTGTTACACCAGATGAAGTTACTTTTGTAAATGTGTTGTCAGCGTGTGTGCATGCAGGTCTTGTTGAAGAAGGTGAAAAGCACTTTACTTCTATGTTGACCAAGTATGAAATCCAAGCAGAGATGGAGCACTATACTTGCATGGTGGACCTCTATGGAAGGGCAGGGCAATTTGATGAAGCTTTAAAGTCGATCAAGAATATGCCATTTGAGCCTGACGTGGTGTTGTGGGGTGCGCTGCTTGCAGCTTGTGGCCTGCATTCAAATTTAGAAATTGGAGTGTATGCTGCAGAGAGGATCCGCAAACTGGAGAGCGATCATCCTGTTTCCTACTCAATTCTTTCAAAGATCCAAGGTGAGAAAGGAATATGGAGCAGTGTAAATGAATTGAGGGACATGATGAAGGAGAGACAAGTCAAAAAGCAGAAGGCATCGAGTAAGCTCTTTCTGTAA

Predicted protein sequences of Glyma19g40875

Limit To All Plant Sequences

>Glyma19g40875.1   sequence type=predicted peptide   gene model=Glyma19g40875   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRCVNRLLSRTPCSFPRNMCTVTSAKLNYMIDAYIQGNNINNARKLFDENPSSRNLVSWNMMMTGYVKHHQIQYAQYLFDQMPFKDTVSWNIMLSGFHRITNSDGLYRCFLQMGRAGVPPDDYTVSTLLRAVISTELDVLIPQLHARALHLALNLSVFVGSSLIRAYASLRDEEAFKQAFDDILGKDVTSWNALVSGYMEVGSMDDAQTTFDMMMPEKNIISWTTLVNGYIRNKRINKARSVFNKMSERNVVSWTAMISGYVQNKRFMDALNLFLLMFNSGTCPNHFTFSSVLDACAGCSSLLTGMQVHLCVIKSGIPEDVISLTSLVDMYAKCGDMDAAFRVFESIPNKNLVSWNSIIGGCARNGIATRALEEFDRMKKAGVTPDEVTFVNVLSACVHAGLVEEGEKHFTSMLTKYEIQAEMEHYTCMVDLYGRAGQFDEALKSIKNMPFEPDVVLWGALLAACGLHSNLEIGVYAAERIRKLESDHPVSYSILSKIQGEKGIWSSVNELRDMMKERQVKKQKASSKLFL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain