Glyma19g40790 - SoyBase

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Report for Sequence Feature Glyma19g40790

Feature Type:	gene_model
Chromosome:	Gm19
Start:	47103027
stop:	47107724
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62240	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr3:23033592-23036653 REVERSE LENGTH=812	SoyBase	E_val: 0	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2231	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR22938	Panther	ZINC FINGER PROTEIN 598	JGI		ISS
UniRef100_G7KTR7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LIM domain and RING finger protein n=1 Tax=Medicago truncatula RepID=G7KTR7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E73A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E73A related cluster n=1 Tax=unknown RepID=UPI000233E73A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g40790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40790

Paralog	Evidence	Comments
Glyma03g38180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g220000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g40790

Limit To All Plant Sequences

>Glyma19g40790.3   sequence type=transcript   gene model=Glyma19g40790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTGGCTGTGGTCTTTAAACCCTTTCAGTTATTTATTTATTTTTATCTTAAATAAATCAAAGCACACACATGTTGACATATAAGGTATTTATCTTACCCATCGCAAAGCAACAGTCCAATAATTTAAGATCAGGAAGCCCGATCGTTTCTAATCCTAGAATCCCAATCTCTGTCTCTCTCCCTCTCCTTATTGCAATAACCTAACCTCGTGTCGTGATCCGGGCACTGGAATTAGGGTTTGCGCTTTCTGTGATCCATAATCAAGAATCGAAAGGAGAGAGAGAGAGATGGACGACTGTTGTGCCGTTTGTGCTGAGCCTTTGGAATGGGTTGCGTACGGACCCTGCTTGCACCGGGAGGTGTGTTCCACGTGCGTCGCTCGTCTCCGTTTCATCTGCGACGATCGCCTTTGCTGCATCTGCAAGACCGAATGCAACCTTGTTTTCGCCACCAAGGCTCTAGGTGATTATACAAGGATGATCAATGATTTTTCGACCCTTCCTTCAGAGGTGAGGGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATACATTTTTTGATGATATGGACCATTACAGGATGATCAAGGCTATGTGCAGACTTTCGTGCAGTGTATGTGACAAGATTGAGGATCAACCACAGGATGCTGCATCAAGGCGGCGAGCGAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATTTATTCCACCGTCACAAGTTGCATATGTGCAATTTGTGTTTAGAAGGAAGGAAGGTTTTTATATGTGAGCAAAAACTATATACCAAAGCACAGTTGAATCAACACATAATCTCAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGCGGTTTCATGGGGCATCCCATGTGTGAATTCTGTAGAACCCCATTTTATGGAGACAATGAATTATACATGCATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGGCAGTATGAGTACTATAAGAATTATGATGACCTAGAGATCCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAGGCTTGCCTTACTAAGAAGTTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTATTGAACATGGAGGGCGGATGTCACGGTCCAAGCGTAATGCTGCTCTTCAGATACCAACTAGCTTCCGATACAGACATGGTAATGAACATGAGCAACGCCGTGGAAGAGGTCGTACGTTTCGTCGTGATACTGAAAATCAACTTTCTATGGCCATTGAAGCTAGTTTGGAAACAGCTAATGCAGAGCGAACATTTCGTGATCAATCGACATCAAGTATTGGGCAAATTGCTGTTGATGATGGGAATGATGATATTGATTCTCTCATTCAGCCATTTGAATCATTAGCTGCTGGAGGTTCTGAATCATCTGCAAGATACCTTCAAGCCTTGGGGCATAGCTCTAGAAATGGGCCTCTGGAAGATTCTTCCTTTCCACCTCTACCCATAACTTCCAGCAATGGCCAGCAAAGGTCCAAACATGAACTGGAAGGTTCATCTAGTAACACTATGGCTGCACGTCTGCGTCGGCATGGCAACAGAACTGTATCCGTTGTCAATTCTGGTAATGCTTGGCCAGCAGCAGGCCGTGGACTGGTACAAACATCAAGTTCTATTCAGGCTACACAAAGAACTACTCACGGACAATTACCTGCTGGTTCATCGAGGAACACACGCGACAATGTCAGAATTGTTCACTCTGCATCTGCTCCAAATCTCATGGAGAACAACTCTGTTGAAATTTCAATTTCTGATTTTCCTCCAGTTTCTGCTGCACAAGTGAGTAAGTTACCTGCCAGCAGCCAGTCTAAATTAAACGTGGAAAATTTTCAATCTGCTAACAAGTCTTTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGAAAGATACAGTATATTTAAAGACATATCTGCCCAATATCGCCAAGGCACAATAGATACAGGTACATATGTGGACTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTGCTTGAGTTGGCAAGACTATGCCCGGATACTCAGAAACAAAAAGAGCTTATTGAGGCTCACAACGCTAGTTTGCAAAGAGATGCTTTCCCAGAAATTAACTTAGTTCGAGGCACTGCTAGCACCCATCACAAAGACGGTAATTTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATAGTAGGGGGAGTAACTCCACAGAGAAATTAGCAGATAGCTTTTTAAGCACTGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAAGTGGAGGTGCTATCAAGGGGTGATTACCGCACTGACAGGGGCAAATTAAAAATCAAGCAGCAGATTGATTCAAATCCTGGTAGTCAACCTACAATGAAGCTTGGTGGGCAGACTGAAACATCAAATGGCAGTTTATCCGATCAAAGTAAAGAGGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAACTTCAAAGTTCCTGAGAGTGCGCCTTGGTGATGGTTCTGTTTCATCCCTTCTTGATCAATCAGATCCTGGAACAACAGACAGCTCAGAAGGTAACAATGATGACGTTGGAGGAGGGCCTCCTGTGCGAGGTGTTTGGCGAAAAGGGGGAGGTCATAAACTTTTTCCCTAGTTTTGCTTCACCGTGACTTTGAAAACGTGAAGCATCAAACGCAGTTGAACTTGCTGGCTAAAGCCATGGTTGAACTGCAATATAAACATGAATTTGGTTTTCGGCTTAGGGAGTGGTATTGGATTATATCGGATTTAAGTTAGATTTAAAGTATATCAAGCTGGGATGTGACTTTGACGTTTTGTTGAAGGCCAAACGCCATTGCCTGAATGGGCTTATATTTTATTTTTGGTTTGGGGTATACTTCGATTTTGATCAAAGACAGAGGTGTTCATATGCCAAGTGTACTGTTTGCTTTTTACGAAAGTGGCACTGTTTCTTACTTTGCGATTTGCTGTCTCATCTATCTTCTGCAATTGTATTAGCTTCTGAGGCCAGGCTAGACACTTGTCGACTGGTCTATGTCAGGTTTGTTTGGGTGTCCGGAATGTTAAAAAGAATCAGTAATTAGTAATAATATAAATAAAACAAGGGTATCTTTTATTTATA

Coding sequences of Glyma19g40790

Limit To All Plant Sequences

>Glyma19g40790.2   sequence type=CDS   gene model=Glyma19g40790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGACTGTTGTGCCGTTTGTGCTGAGCCTTTGGAATGGGTTGCGTACGGACCCTGCTTGCACCGGGAGGTGTGTTCCACGTGCGTCGCTCGTCTCCGTTTCATCTGCGACGATCGCCTTTGCTGCATCTGCAAGACCGAATGCAACCTTGTTTTCGCCACCAAGGCTCTAGGTGATTATACAAGGATGATCAATGATTTTTCGACCCTTCCTTCAGAGGTGAGGGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATACATTTTTTGATGATATGGACCATTACAGGATGATCAAGGCTATGTGCAGACTTTCGTGCAGTGTATGTGACAAGATTGAGGATCAACCACAGGATGCTGCATCAAGGCGGCGAGCGAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATTTATTCCACCGTCACAAGTTGCATATGTGCAATTTGTGTTTAGAAGGAAGGAAGGTTTTTATATGTGAGCAAAAACTATATACCAAAGCACAGTTGAATCAACACATAATCTCAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGCGGTTTCATGGGGCATCCCATGTGTGAATTCTGTAGAACCCCATTTTATGGAGACAATGAATTATACATGCATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGGCAGTATGAGTACTATAAGAATTATGATGACCTAGAGATCCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAGGCTTGCCTTACTAAGAAGTTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTATTGAACATGGAGGGCGGATGTCACGGTCCAAGCGTAATGCTGCTCTTCAGATACCAACTAGCTTCCGATACAGACATGGTAATGAACATGAGCAACGCCGTGGAAGAGGTCGTACGTTTCGTCGTGATACTGAAAATCAACTTTCTATGGCCATTGAAGCTAGTTTGGAAACAGCTAATGCAGAGCGAACATTTCGTGATCAATCGACATCAAGTATTGGGCAAATTGCTGTTGATGATGGGAATGATGATATTGATTCTCTCATTCAGCCATTTGAATCATTAGCTGCTGGAGGTTCTGAATCATCTGCAAGATACCTTCAAGCCTTGGGGCATAGCTCTAGAAATGGGCCTCTGGAAGATTCTTCCTTTCCACCTCTACCCATAACTTCCAGCAATGGCCAGCAAAGGTCCAAACATGAACTGGAAGGTTCATCTAGTAACACTATGGCTGCACGTCTGCGTCGGCATGGCAACAGAACTGTATCCGTTGTCAATTCTGGTAATGCTTGGCCAGCAGCAGGCCGTGGACTGGTACAAACATCAAGTAATCCTTCACAATCTAAACCGTCAACAAATAATGTTCTTGGACTGTCTCGTAACACTGGGCAGATGAAAACAGTAATTAACAGTGGACCTTCATCATCAACTTATGCAGGTTCTATTCAGGCTACACAAAGAACTACTCACGGACAATTACCTGCTGGTTCATCGAGGAACACACGCGACAATGTCAGAATTGTTCACTCTGCATCTGCTCCAAATCTCATGGAGAACAACTCTGTTGAAATTTCAATTTCTGATTTTCCTCCAGTTTCTGCTGCACAAGTGAGTAAGTTACCTGCCAGCAGCCAGTCTAAATTAAACGTGGAAAATTTTCAATCTGCTAACAAGTCTTTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGAAAGATACAGTATATTTAAAGACATATCTGCCCAATATCGCCAAGGCACAATAGATACAGGTACATATGTGGACTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTGCTTGAGTTGGCAAGACTATGCCCGGATACTCAGAAACAAAAAGAGCTTATTGAGGCTCACAACGCTAGTTTGCAAAGAGATGCTTTCCCAGAAATTAACTTAGTTCGAGGCACTGCTAGCACCCATCACAAAGACGGTAATTTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATAGTAGGGGGAGTAACTCCACAGAGAAATTAGCAGATAGCTTTTTAAGCACTGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAAGTGGAGGTGCTATCAAGGGGTGATTACCGCACTGACAGGGGCAAATTAAAAATCAAGCAGCAGATTGATTCAAATCCTGGTAGTCAACCTACAATGAAGCTTGGTGGGCAGACTGAAACATCAAATGGCAGTTTATCCGATCAAAGTAAAGAGGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAACTTCAAAGTTCCTGAGAGTGCGCCTTGGTGATGGTTCTGTTTCATCCCTTCTTGATCAATCAGATCCTGGAACAACAGACAGCTCAGAAGGTAACAATGATGACGTTGGAGGAGGGCCTCCTGTGCGAGGTGTTTGGCGAAAAGGGGGAGGTCATAAACTTTTTCCCTAG

>Glyma19g40790.3   sequence type=CDS   gene model=Glyma19g40790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGACTGTTGTGCCGTTTGTGCTGAGCCTTTGGAATGGGTTGCGTACGGACCCTGCTTGCACCGGGAGGTGTGTTCCACGTGCGTCGCTCGTCTCCGTTTCATCTGCGACGATCGCCTTTGCTGCATCTGCAAGACCGAATGCAACCTTGTTTTCGCCACCAAGGCTCTAGGTGATTATACAAGGATGATCAATGATTTTTCGACCCTTCCTTCAGAGGTGAGGGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATACATTTTTTGATGATATGGACCATTACAGGATGATCAAGGCTATGTGCAGACTTTCGTGCAGTGTATGTGACAAGATTGAGGATCAACCACAGGATGCTGCATCAAGGCGGCGAGCGAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATTTATTCCACCGTCACAAGTTGCATATGTGCAATTTGTGTTTAGAAGGAAGGAAGGTTTTTATATGTGAGCAAAAACTATATACCAAAGCACAGTTGAATCAACACATAATCTCAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGCGGTTTCATGGGGCATCCCATGTGTGAATTCTGTAGAACCCCATTTTATGGAGACAATGAATTATACATGCATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGGCAGTATGAGTACTATAAGAATTATGATGACCTAGAGATCCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAGGCTTGCCTTACTAAGAAGTTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTATTGAACATGGAGGGCGGATGTCACGGTCCAAGCGTAATGCTGCTCTTCAGATACCAACTAGCTTCCGATACAGACATGGTAATGAACATGAGCAACGCCGTGGAAGAGGTCGTACGTTTCGTCGTGATACTGAAAATCAACTTTCTATGGCCATTGAAGCTAGTTTGGAAACAGCTAATGCAGAGCGAACATTTCGTGATCAATCGACATCAAGTATTGGGCAAATTGCTGTTGATGATGGGAATGATGATATTGATTCTCTCATTCAGCCATTTGAATCATTAGCTGCTGGAGGTTCTGAATCATCTGCAAGATACCTTCAAGCCTTGGGGCATAGCTCTAGAAATGGGCCTCTGGAAGATTCTTCCTTTCCACCTCTACCCATAACTTCCAGCAATGGCCAGCAAAGGTCCAAACATGAACTGGAAGGTTCATCTAGTAACACTATGGCTGCACGTCTGCGTCGGCATGGCAACAGAACTGTATCCGTTGTCAATTCTGGTAATGCTTGGCCAGCAGCAGGCCGTGGACTGGTACAAACATCAAGTTCTATTCAGGCTACACAAAGAACTACTCACGGACAATTACCTGCTGGTTCATCGAGGAACACACGCGACAATGTCAGAATTGTTCACTCTGCATCTGCTCCAAATCTCATGGAGAACAACTCTGTTGAAATTTCAATTTCTGATTTTCCTCCAGTTTCTGCTGCACAAGTGAGTAAGTTACCTGCCAGCAGCCAGTCTAAATTAAACGTGGAAAATTTTCAATCTGCTAACAAGTCTTTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGAAAGATACAGTATATTTAAAGACATATCTGCCCAATATCGCCAAGGCACAATAGATACAGGTACATATGTGGACTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTGCTTGAGTTGGCAAGACTATGCCCGGATACTCAGAAACAAAAAGAGCTTATTGAGGCTCACAACGCTAGTTTGCAAAGAGATGCTTTCCCAGAAATTAACTTAGTTCGAGGCACTGCTAGCACCCATCACAAAGACGGTAATTTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATAGTAGGGGGAGTAACTCCACAGAGAAATTAGCAGATAGCTTTTTAAGCACTGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAAGTGGAGGTGCTATCAAGGGGTGATTACCGCACTGACAGGGGCAAATTAAAAATCAAGCAGCAGATTGATTCAAATCCTGGTAGTCAACCTACAATGAAGCTTGGTGGGCAGACTGAAACATCAAATGGCAGTTTATCCGATCAAAGTAAAGAGGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAACTTCAAAGTTCCTGAGAGTGCGCCTTGGTGATGGTTCTGTTTCATCCCTTCTTGATCAATCAGATCCTGGAACAACAGACAGCTCAGAAGGTAACAATGATGACGTTGGAGGAGGGCCTCCTGTGCGAGGTGTTTGGCGAAAAGGGGGAGGTCATAAACTTTTTCCCTAG

Predicted protein sequences of Glyma19g40790

Limit To All Plant Sequences

>Glyma19g40790.2   sequence type=predicted peptide   gene model=Glyma19g40790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRLCCICKTECNLVFATKALGDYTRMINDFSTLPSEVREGKVGSYWYHEDTNTFFDDMDHYRMIKAMCRLSCSVCDKIEDQPQDAASRRRAKFRNIGQLKGHLFHRHKLHMCNLCLEGRKVFICEQKLYTKAQLNQHIISGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQEHFLCEDEACLTKKFVVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEHEQRRGRGRTFRRDTENQLSMAIEASLETANAERTFRDQSTSSIGQIAVDDGNDDIDSLIQPFESLAAGGSESSARYLQALGHSSRNGPLEDSSFPPLPITSSNGQQRSKHELEGSSSNTMAARLRRHGNRTVSVVNSGNAWPAAGRGLVQTSSNPSQSKPSTNNVLGLSRNTGQMKTVINSGPSSSTYAGSIQATQRTTHGQLPAGSSRNTRDNVRIVHSASAPNLMENNSVEISISDFPPVSAAQVSKLPASSQSKLNVENFQSANKSLVEKIRGALDFDEERYSIFKDISAQYRQGTIDTGTYVDYVQQFGLSHLVLELARLCPDTQKQKELIEAHNASLQRDAFPEINLVRGTASTHHKDGNLNKKGKGKSVDSRGSNSTEKLADSFLSTVHQLQANYKSSEEKVEVLSRGDYRTDRGKLKIKQQIDSNPGSQPTMKLGGQTETSNGSLSDQSKEDGGGGNKQRKKTSKFLRVRLGDGSVSSLLDQSDPGTTDSSEGNNDDVGGGPPVRGVWRKGGGHKLFP*

>Glyma19g40790.3   sequence type=predicted peptide   gene model=Glyma19g40790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRLCCICKTECNLVFATKALGDYTRMINDFSTLPSEVREGKVGSYWYHEDTNTFFDDMDHYRMIKAMCRLSCSVCDKIEDQPQDAASRRRAKFRNIGQLKGHLFHRHKLHMCNLCLEGRKVFICEQKLYTKAQLNQHIISGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQEHFLCEDEACLTKKFVVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEHEQRRGRGRTFRRDTENQLSMAIEASLETANAERTFRDQSTSSIGQIAVDDGNDDIDSLIQPFESLAAGGSESSARYLQALGHSSRNGPLEDSSFPPLPITSSNGQQRSKHELEGSSSNTMAARLRRHGNRTVSVVNSGNAWPAAGRGLVQTSSSIQATQRTTHGQLPAGSSRNTRDNVRIVHSASAPNLMENNSVEISISDFPPVSAAQVSKLPASSQSKLNVENFQSANKSLVEKIRGALDFDEERYSIFKDISAQYRQGTIDTGTYVDYVQQFGLSHLVLELARLCPDTQKQKELIEAHNASLQRDAFPEINLVRGTASTHHKDGNLNKKGKGKSVDSRGSNSTEKLADSFLSTVHQLQANYKSSEEKVEVLSRGDYRTDRGKLKIKQQIDSNPGSQPTMKLGGQTETSNGSLSDQSKEDGGGGNKQRKKTSKFLRVRLGDGSVSSLLDQSDPGTTDSSEGNNDDVGGGPPVRGVWRKGGGHKLFP*

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