Glyma19g40640 - SoyBase

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Report for Sequence Feature Glyma19g40640

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46997217
stop:	47003370
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02400	AT	Annotation by Michelle Graham. TAIR10: gibberellin 2-oxidase 6 \| chr1:486964-489391 FORWARD LENGTH=329	SoyBase	E_val: 5.00E-130	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0045487	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin catabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
GO:0052634	GO-mf	Annotation by Michelle Graham. GO Molecular Function: C-19 gibberellin 2-beta-dioxygenase activity	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_I1NBF0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NBF0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q4W8C2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin 2-oxidase n=1 Tax=Vigna angularis RepID=Q4W8C2_PHAAN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g40640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40640

Paralog	Evidence	Comments
Glyma03g38030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g218700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g40640

Limit To All Plant Sequences

>Glyma19g40640.1   sequence type=CDS   gene model=Glyma19g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTGCCTTCTCCTTCTCCAACTTCTATCAAGACAAGTTACAAGAAAAAGAAGACGATAATAAAAATTCCAACGATAGACCTATCCATGGAAAGGACAGAGTTGTCGGAAACAGTGGTGAAAGCCTGCGAGGAATACGGCTTCTTCAAGGTTGTTAACCACAATGTTCCGAAGGAGGTTATTGCAAGAATGGAAGAAGAGGGTGCAGAGTTTTTTGGCAAAGCCACCTACGAGAAGCGTGGAGCTGGCCCAGCAAGTCCTTTCGGTTATGGCTTCAGCAATATCGGGCCCAACGGAGATATGGGTGACCTAGAGTATCTTCTGCTTCATGCTAACCCTCTTTCCGTCTCTGAGAGATCCAAAACCATCGCTAATGACTCCACCAAGTTCAGTTGTGTTGTGAATGATTATGTAGAAGCAGTAAAAGAAGTAACGTGCGAGATTTTAGATCTGGTGGTTGAGGGATTAGGGGTCCCAGACAAGTTCGCACTAAGCAGGCTCATTAGAGATGTGAATAGTGATTCAGTTCTGAGGATCAATCACTACCCTCCATTGAACCAGAAGGTGAAGGGCAACAAGAATAGCATTGGTTTTGGGGCGCATTCTGACCCTCAGATCTTGACCATCATGCGGTCCAATGACGTGGGTGGGCTTCAAATTTACACCCGTGATGGGTTGTGGATTCCTGTCCCTCCTGACCCCAATCAATTCTTTGTCATGGTGGGTGATGTCTTCCAGGTTTTGACAAATGGAAAGTTCATGAGTGTGAGGCACAGGGCATTAACCAACACATTGAAGGCAAGGATGTCAATGATGTACTTTGCAGCACCACCACTTGATTGGTGGATCACTCCGCTACCCAAGATGGTGTCACCACCACAAAATCCAAGTCTATATAAGCCCTTCACATGGGCCCAGTACAAGAAAGCAACATATTCCTTACGCCTCGGAGATTCTCGACTTGATCTCTTCAAGGCCCAGCTAGATACCCATCATGTATCTGCCTCTCCATCACAAATTCAATGTTAG

Predicted protein sequences of Glyma19g40640

Limit To All Plant Sequences

>Glyma19g40640.1   sequence type=predicted peptide   gene model=Glyma19g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVPSPSPTSIKTSYKKKKTIIKIPTIDLSMERTELSETVVKACEEYGFFKVVNHNVPKEVIARMEEEGAEFFGKATYEKRGAGPASPFGYGFSNIGPNGDMGDLEYLLLHANPLSVSERSKTIANDSTKFSCVVNDYVEAVKEVTCEILDLVVEGLGVPDKFALSRLIRDVNSDSVLRINHYPPLNQKVKGNKNSIGFGAHSDPQILTIMRSNDVGGLQIYTRDGLWIPVPPDPNQFFVMVGDVFQVLTNGKFMSVRHRALTNTLKARMSMMYFAAPPLDWWITPLPKMVSPPQNPSLYKPFTWAQYKKATYSLRLGDSRLDLFKAQLDTHHVSASPSQIQC*

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