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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma19g40620

Feature Type:gene_model
Chromosome:Gm19
Start:46986374
stop:46987701
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g40620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01940AT Annotation by Michelle Graham. TAIR10: NFU domain protein 1 | chr4:842265-843388 REVERSE LENGTH=231 SoyBaseE_val: 1.00E-87ISS
GO:0009658GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast organization SoyBaseN/AISS
GO:0016226GO-bp Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005198GO-mf Annotation by Michelle Graham. GO Molecular Function: structural molecule activity SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0051536GO-mf Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding SoyBaseN/AISS
PTHR11178Panther IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED JGI ISS
PF01106PFAM NifU-like domain JGI ISS
UniRef100_G7KTN7UniRef Annotation by Michelle Graham. Most informative UniRef hit: NifU-like protein n=1 Tax=Medicago truncatula RepID=G7KTN7_MEDTR SoyBaseE_val: 2.00E-101ISS
UniRef100_I1NBE8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NBE8_SOYBN SoyBaseE_val: 1.00E-163ISS

Expression Patterns of Glyma19g40620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g40620 not represented in the dataset
Glyma19g40620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g40620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g218400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g40620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g40620
>Glyma19g40620.1   sequence type=CDS   gene model=Glyma19g40620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATGGCAACTCTAACCCCAATGTGTTGCTCATGTTCAACACCCAGATTCAGTGGTCAACACCATCAGCATGGCTATCAACTAAAACTAAAACCCTCAGTTTTGAATTTCAGACCTCAGAAGCAAAATAGAAGCATCAGAATCCGATCACCCTCTGCCTCCAACCCGAACCAGAATGAGTCTTCTTCTCCCGGATTATACTCTGCCAAGAAATTCGACCTCACCGCATCCAACGTCGACCTCGTTCTCGACGATGTTCGCCCTTACCTCATCGCCGACGGCGGCAACGTGGACGTGGTGTCGGTGGAAGACGGCGTGGTATCTCTCCGTCTCGAAGGAGCATGCGAGAGCTGCCCCAGCTCCACCACCACCATGACCATGGGGATCGAGCGCGTTCTTAAGGAAAAATTCGGAGACGCTGTTAAGGACATACGCCAAGTCTACCTTACCGAACCAAGGGAGACAACGGTTGAGGCGGTGAATAATCATCTTGAGATATTGAGGCCGGCCATTAAGAATTACGGAGGGAGCGTGGAAGTGGTGTCCGTAGAAGGCGGGGAGTGCGAGGTAAAGTATGTTGGACCTGACTCCATTGGATCCGGAATCAAAGCAACCATCAAGGAGAAGTTTCCAGATATTCTCAATGTTACCTTCACCACCACCACTTAG
Predicted protein sequences of Glyma19g40620
>Glyma19g40620.1   sequence type=predicted peptide   gene model=Glyma19g40620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMATLTPMCCSCSTPRFSGQHHQHGYQLKLKPSVLNFRPQKQNRSIRIRSPSASNPNQNESSSPGLYSAKKFDLTASNVDLVLDDVRPYLIADGGNVDVVSVEDGVVSLRLEGACESCPSSTTTMTMGIERVLKEKFGDAVKDIRQVYLTEPRETTVEAVNNHLEILRPAIKNYGGSVEVVSVEGGECEVKYVGPDSIGSGIKATIKEKFPDILNVTFTTTT*






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