Glyma19g40550 - SoyBase

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Report for Sequence Feature Glyma19g40550

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46915407
stop:	46918937
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01970	AT	Annotation by Michelle Graham. TAIR10: stachyose synthase \| chr4:854073-856953 REVERSE LENGTH=876	SoyBase	E_val: 0	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0047268	GO-mf	Annotation by Michelle Graham. GO Molecular Function: galactinol-raffinose galactosyltransferase activity	SoyBase	N/A	ISS
PF05691	PFAM	Raffinose synthase or seed inhibition protein Sip1	JGI		ISS
UniRef100_I1NBD9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NBD9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SBZ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Galactinol-raffinose galactosyltransferase n=1 Tax=Vigna angularis RepID=Q9SBZ0_PHAAN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma19g40550

Locus	Gene Symbol	Protein Name
	STS	galactinol-raffinose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds

Expression Patterns of Glyma19g40550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g40550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g217700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g40550

Limit To All Plant Sequences

>Glyma19g40550.1   sequence type=CDS   gene model=Glyma19g40550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCTCCAAACAATCCAGTGAATTCCACCTTGGGATTTAAGTCACTGGAAAAGGTTTTTGATTTATGTGACGGGAAATTCACCGTGAGAGGTGTGCCATTACTCTCTCAGGTACCCAATAACGTCACTTTCAGTTCCTTCTCCTCAATCTGTGAACCCCGTGACGCCCCACCTTCCATCCTTCAACGTGTCATTGCCGTGTCACACAAAGGTGGCTTCTTCGGATTCTCCCAGGTTTCTCCCTCCGACAGATTAACAAACTCCTTAGGTAGTTTCAGTGGCAGAAACTTCCTTAGCATCTTCAGGTTCAAAACATGGTGGTCTACCCAGTGGGTAGGAAATTCCGGTTCAGACCTTCAAATGGAAACCCAGTGGGTCCTCATAGAAATCCCCGAAATAAAATCCTATGTTGTAATCATTCCCATCATTGAAAAATCTTTCAGGTCCGCACTTCACCCTGGCTCTGATGGCCATGTCATGATTTGTGCTGAGAGTGGTTCAACTCAAGTGAAAGCATCGAGTTTCGGTGCAATTGCTTATGTCCACGTTTCTGAGAACCCTTACAACGTGATGAAAGAAGCCTATAGTGTTCTCAGGGTTCACCTCGATTCGTTCAGGTTGTTGGAGGAGAAAACGGTGCCAAAAATTGCTGACAAGTTCGGTTGGTGCACTTGGGATGCGTTCTACTTAACCGTGAACCCTGTTGGGGTTTGGCATGGGCTTAAGGATTTTGCCGAGGGTGGGGTGGCTCCGAGGTTTGTTATCATTGATGATGGCTGGCAAAGTGTGAATTTTGATGGTGATGACCCCAACGTGGATGCTAAGAATCTTGTTCTTGGCGGGGAACAAATGACTGCGAGGCTTCATAGATTTGAAGAATGTGACAAGTTTGGAAGTTACCAAAAGGGGCTCCTTTTGGGTCCTAATGCTCCTTCTTTTAACCCAAAGACGGTTAAGGAGTTGATTGCGAAGGGGATAGAAGTTGAGCGTTTGGGGAAGCTGCGTGATGAGGCTGTTTCGTCTGGGGTTTCTGATTTGAGTTTGACCGAGATTGAGTCGAGGATTGTGAAGGTGAAAAAGGAAATTGATGATCTCTTTGGTGGGGAGGGAAAGGAGAACAAAGAATTATGTGGAGGGTGTTGTTGCAAAGCAAATGAGTGTGGTGGGATTAAGGCTTTCATAAGGGACTTGAGGACTGAATTCAAAGGTTTGGATGATGTCTATGTGTGGCATGCCCTTTGTGGCTCGTGGGGTGGTGTGAGGCCAGGAGCCACACACTTGAATTCCAAAATAACACCTTGCAAACTCTCCCCTGGCCTTGATGGGACCATGCAAGATCTTGCTGTGGTTAAAATAGTGGAAGGTTCCATAGGACTTGTTCATCCTGATCAAGCTAATGACTTGTACGATTCCATGCACTCTTATCTTGCCCAATCTGGTGTTACCGGAGTCAAAATTGACGTCTTTCATAGTCTTGAATATGTGTGCGAGGAATATGGAGGCAGAGTCGAGCTTGCAAAGGCTTATTACGATGGGTTGACAAACTCTATTGTCAAGAATTTTAATGGAAGTGGAATCATCGCTAGCATGCAGCAGTGCAACGACTTTTTCTTCCTTGGAACCAAGCAAATTCCCATGGGAAGAGTTGGGGATGACTTTTGGTTCCAAGACCCCAATGGGGACCCAATGGGAGTGTTCTGGTTACAAGGGGTGCACATGATTCACTGTGCCTACAACAGTTTGTGGATGGGGCAGATGATTCAGCCCGATTGGGACATGTTCCAATCGGATCATGTGTGTGCCAAATTTCATGCGGGTTCGAGGGCTATTTGTGGCGGTCCTGTCTATGTAAGTGACAGTGTGGGCTCTCATGACTTTGATCTCATTAAGATGCTTGTGTTCCCTGATGGTACCGTGCCCAAATGCATACATTTTGCACTTCCAACAAGAGATTGCCTTTTCAAGAACCCTCTCTTTGACCAAAAAACCGTTCTCAAAATTTGGAACTTCAACAAGTATGGAGGAGTTATTGGTGCTTTCAACTGTCAAGGGGCTGGTTGGGACCCTAAGATGAAGAAGATCAAGGGTTTCTCTGAATGCTACAGGCCAATTTCTTGTACTGTGCATGTAACTGAGGTTGAATGGGACCAAAAGAAAGAAGCAGTTCACATGGGTAAGGCAGAGGAGTATGTCGTGTATCTCAATCAGGCTGAGGAACTGCATTTCATGACCCCAAAGTCTGAACCACTCCAATTTACTATTCAACCTTCCACTTTTGAGATCTACAACTTTGTCCCAGTTGAAAAGCTAGGTGGCAGCATCAAATTTGCACCAATTGGGCTCACAAACATGTTCAACAGTGGAGGGACAATTCAAGAATTGGAGTGTGTTGAGAAGGGTGCAAAGGTTAAGGTTAAGGGTGATGGGAGATTCCTTGCTTACTCAAGTGAATCTCCAAAGAAGTTCCAACTGAATGGTTCTGATGTTGCTTTTGAGTGGCTCCCTGATGGAAAACTCACTCTCAACCTTGCTTGGATTGAAGAGAATGGCGGGGTTTCTGATTTGGCAATTTTCTTCTAG

Predicted protein sequences of Glyma19g40550

Limit To All Plant Sequences

>Glyma19g40550.1   sequence type=predicted peptide   gene model=Glyma19g40550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPNNPVNSTLGFKSLEKVFDLCDGKFTVRGVPLLSQVPNNVTFSSFSSICEPRDAPPSILQRVIAVSHKGGFFGFSQVSPSDRLTNSLGSFSGRNFLSIFRFKTWWSTQWVGNSGSDLQMETQWVLIEIPEIKSYVVIIPIIEKSFRSALHPGSDGHVMICAESGSTQVKASSFGAIAYVHVSENPYNVMKEAYSVLRVHLDSFRLLEEKTVPKIADKFGWCTWDAFYLTVNPVGVWHGLKDFAEGGVAPRFVIIDDGWQSVNFDGDDPNVDAKNLVLGGEQMTARLHRFEECDKFGSYQKGLLLGPNAPSFNPKTVKELIAKGIEVERLGKLRDEAVSSGVSDLSLTEIESRIVKVKKEIDDLFGGEGKENKELCGGCCCKANECGGIKAFIRDLRTEFKGLDDVYVWHALCGSWGGVRPGATHLNSKITPCKLSPGLDGTMQDLAVVKIVEGSIGLVHPDQANDLYDSMHSYLAQSGVTGVKIDVFHSLEYVCEEYGGRVELAKAYYDGLTNSIVKNFNGSGIIASMQQCNDFFFLGTKQIPMGRVGDDFWFQDPNGDPMGVFWLQGVHMIHCAYNSLWMGQMIQPDWDMFQSDHVCAKFHAGSRAICGGPVYVSDSVGSHDFDLIKMLVFPDGTVPKCIHFALPTRDCLFKNPLFDQKTVLKIWNFNKYGGVIGAFNCQGAGWDPKMKKIKGFSECYRPISCTVHVTEVEWDQKKEAVHMGKAEEYVVYLNQAEELHFMTPKSEPLQFTIQPSTFEIYNFVPVEKLGGSIKFAPIGLTNMFNSGGTIQELECVEKGAKVKVKGDGRFLAYSSESPKKFQLNGSDVAFEWLPDGKLTLNLAWIEENGGVSDLAIFF*

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