Glyma19g40490 - SoyBase

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Report for Sequence Feature Glyma19g40490

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46873776
stop:	46878127
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47350	AT	Annotation by Michelle Graham. TAIR10: HIT zinc finger ;PAPA-1-like conserved region \| chr2:19434588-19437045 FORWARD LENGTH=486	SoyBase	E_val: 5.00E-120	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
PTHR21561	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR21561:SF3	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04438	PFAM	HIT zinc finger	JGI		ISS
PF04795	PFAM	PAPA-1-like conserved region	JGI		ISS
UniRef100_G7KSU6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: INO80 complex subunit B n=1 Tax=Medicago truncatula RepID=G7KSU6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NBD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBD4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g40490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40490

Paralog	Evidence	Comments
Glyma03g37890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g217200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g40490

Limit To All Plant Sequences

>Glyma19g40490.1   sequence type=CDS   gene model=Glyma19g40490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATTTGGGAGGTACCCGGTTTGATGGCCTCAGCAATGCTGTGAGGAGGAAGAGGAGTCAGACTTCGCGCAGGCCTCGGCCTGATTCGCAGCATGCTTCTGAAGGTCAGGAACTGTCTCCCTTGTCTTCGACACCTTCGGAGGATACTGGTAAGGCCTCTAGTGATGAGAATGTTGGTTATGATGCAAATTCCAAGAGAAAGGAATTCAATCTTAACCATTGTGTCTCTCAAACCTCCTCTGGTACTGGAGCCGAAGATGATAAATCCCATAAAAAGAGTAAAAAAGATGAAGGATTCCACACGTTTTATAATAATGAGCCTGTACGGAGCGGTTTGAATAATAAACGCTGTAGTGAAGGTGTTCTTGCTCCAGCAAATTGGAAAGGCTCTAGCAAAGTGAAGGATAGCTTGGATTCAGAGTTGAGAAATGCAGATTTGTATGGTGGAAGGAATCCTGAGAGCATGGGTTTGGCACAGTTTGGTGGCTCTCAGGATGGATTGGGGAATGAGAACCGGGTTAAAAAGGTTAAACTCAAGGTTGGCGGAGTGACACGCACTATTCAAGCCAATTCAGCAACCAATGGTGCTTCGGGAAGTGGATCAACAATGAAGAACTCTCGTTCATCAGATGCCTCCAGACCACGCCAAAAGCAACAGAGTAATTCAGACGATAATAATTCTCCTTCTGATAAGAGGAGTCGTCTACAAGGTGTTCCGTGGAAGGATTTCTCAAGGGGTGGTTTTGGTCTTGGGAAGGAGGAATCATTGATGGGGAAGATTTCTGGAAAGAACACATCTAGTAAGCTGGGAGACAAGTCTGAACCAGTTCGTAAGAGCAAGCGAGTACCAAAGAGACGTGTACTTGATGGGGAATTTGGTGATGATGATGATGAGGATGATGAGATTCGGTACTTGGAAAAGCTGAAAACGTCAAAAGTTTCTGCAGTCTATAGAGATGAAGAAGAATTAAGCAAGAAACATCGAAGGCTATCTAGTGTCTCTAATTTGGAAAATGCTGCCCCAAGGTCAGCCAAAGATGGTAAGAAAAGGTCTAGATCTGATAGAGTGTATGAGGACACAGATTATGAGGATGAAGAGGAGTCAGGGTCTGATGGTGAGCTTGAGGATAAGAAAAAAAAAAAACAGAGGAAGGAATCTGTTGACGTATTGATGGACAGTAAGAGGGAAATGACTCTTACGACTCGTCAACGGGCCCTTCAATCAAGCAAAGATGCCTCTGCATCTAGTTCTAGTTTAATTGAGTTTCCCAACGGGTTACCACCTGCCCCACCAAGAAAACAAAAGGAGAAGCTTTCAGAGGTCGATCAGCAATTGAAGAAAGCTGAGGCTGCACAGAGGCGTAGAATGCAAGTTGAGAAGGCTGCCAGGGAATCTGAGGCTGAAGCTATCAGGAAAATACTTGGTCAAGACTCCAGTAGGAAAAAGAGAGAAGAGAAAATAAAGAAGCGCCAGGAAGAACTGGCACAGGAAAGGGCAGCCAATGCACTAATGCTTGCATCGAATACCATCAGATACACAATGGGTCCGACTGGAACGTTTGTGACTTTTTCCGAGGAAATGGGGCTTCCTAGCGTATTGAACTCCAAACCCGTCAGTTATCCCCCACCTCGTGAGAAGTGTGCTGGTCCATCTTGTACAAATCCTTATAAGTATCGGGATTCAAAATCAAAGCTTCCTCTTTGCAGTCTCCAATGCTACAAGGCTGTCCAAGAGAAGGTGGTGGCTGAAACTACCTGTTGA

Predicted protein sequences of Glyma19g40490

Limit To All Plant Sequences

>Glyma19g40490.1   sequence type=predicted peptide   gene model=Glyma19g40490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDLGGTRFDGLSNAVRRKRSQTSRRPRPDSQHASEGQELSPLSSTPSEDTGKASSDENVGYDANSKRKEFNLNHCVSQTSSGTGAEDDKSHKKSKKDEGFHTFYNNEPVRSGLNNKRCSEGVLAPANWKGSSKVKDSLDSELRNADLYGGRNPESMGLAQFGGSQDGLGNENRVKKVKLKVGGVTRTIQANSATNGASGSGSTMKNSRSSDASRPRQKQQSNSDDNNSPSDKRSRLQGVPWKDFSRGGFGLGKEESLMGKISGKNTSSKLGDKSEPVRKSKRVPKRRVLDGEFGDDDDEDDEIRYLEKLKTSKVSAVYRDEEELSKKHRRLSSVSNLENAAPRSAKDGKKRSRSDRVYEDTDYEDEEESGSDGELEDKKKKKQRKESVDVLMDSKREMTLTTRQRALQSSKDASASSSSLIEFPNGLPPAPPRKQKEKLSEVDQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREEKIKKRQEELAQERAANALMLASNTIRYTMGPTGTFVTFSEEMGLPSVLNSKPVSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLQCYKAVQEKVVAETTC*

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