Glyma19g40481 - SoyBase

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Report for Sequence Feature Glyma19g40481

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46867810
stop:	46872121
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40481

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02560	AT	Annotation by Michelle Graham. TAIR10: nuclear encoded CLP protease 5 \| chr1:538000-539805 FORWARD LENGTH=298	SoyBase	E_val: 3.00E-20	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0018119	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-cysteine S-nitrosylation	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009532	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplastic endopeptidase Clp complex	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
PTHR10381	Panther	PROTEASE FAMILY S14 CLPP PROTEASE	JGI		ISS
PF00574	PFAM	Clp protease	JGI		ISS
UniRef100_I1NBD3	UniRef	Annotation by Michelle Graham. Best UniRef hit: ATP-dependent Clp protease proteolytic subunit n=1 Tax=Glycine max RepID=I1NBD3_SOYBN	SoyBase	E_val: 3.00E-19	ISS
UniRef100_I1NBD3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent Clp protease proteolytic subunit n=1 Tax=Glycine max RepID=I1NBD3_SOYBN	SoyBase	E_val: 3.00E-19	ISS

Expression Patterns of Glyma19g40481

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g40481 not represented in the dataset	Glyma19g40481 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40481

Paralog	Evidence	Comments
Glyma03g37880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40481 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g217100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40481

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g40481

Limit To All Plant Sequences

>Glyma19g40481.1   sequence type=CDS   gene model=Glyma19g40481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCCATTCTGCTTAGCGCAGGGACTAAAGGAAATAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAACCGCTTGGTGGAGCTCAAGGAGGACAAACTGACATAGATATACAGGTAGAAGTAGAATGGAGCCGTGCACGTGTGTTTTGGCCTATGTATTCGTGTACGTCTGCTTCGGGATTTGGATTCGCACGGCTATTGGATAAGGTCTCTGCAATTGGATTCCCTCATAATAATAATAATGGAAATGATGCGAGGCAAACGTGA

Predicted protein sequences of Glyma19g40481

Limit To All Plant Sequences

>Glyma19g40481.1   sequence type=predicted peptide   gene model=Glyma19g40481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAILLSAGTKGNRYSLPNSRIMIHQPLGGAQGGQTDIDIQVEVEWSRARVFWPMYSCTSASGFGFARLLDKVSAIGFPHNNNNGNDARQT*

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