Report for Sequence Feature Glyma19g40460
Feature Type: gene_model
Chromosome: Gm19
Start: 46857082
stop: 46858378
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g40460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G02570 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02575.1); Has 108 Blast hits to 55 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:541380-542216 FORWARD LENGTH=278
SoyBase E_val: 6.00E-54 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_UPI000233E5D1 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E5D1 related cluster n=1 Tax=unknown RepID=UPI000233E5D1
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g40460
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g40460
Paralog Evidence Comments
Glyma03g37860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g40460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g216900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g40460
Coding sequences of Glyma19g40460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g40460.1 sequence type=CDS gene model=Glyma19g40460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTGCTATGGGTAATCTGCAGCAAAAAGCCAAAGAGCTCTTCAAGTTCAAGTGCTTAACTCCAAAAGAGATGTTCTACCTCATCACCTTCACCCTCCTCTCCCTCCTCTTACCCCTCTCGTTTCTTCTCCTAGCCAAATTCTCCGATGCGCAATACTATCTCCAAACCCTCGCTTGGTACCATTCACCACAACACTTTCCCTATGTTTTAACTCTCGCCCTTCACATCAACCCTCTCATTCTCTACGTTCTTGTGTCCATTATTAGCATGGCTTCCTTAATCCACGGCTTAACGGGAAAAATCATCATTTTGAGTGACTCGTTATCATCATCAAGCACTTTTCTTCAACCTCGTATATTGACTGCGTGGATTGTTCTTTGCACGTTCCAAGTTTGCGTTGGTTTGGGCATAGAGGGGAGCATTGAGGCGGGGCTCTATGACTCTAATGATGAGTCGATGAGTTTTAAATTTGGTGTTGAGAGAATCTTGTTAAGCAGAGTTGTATTCCTCTTGGGGTTGCACGAGACCATGCAGGTTTGGGCCAGGATGGTGGTGAGGCCCGTGGTGGACGACACCGTGTTCGGCGTCGCGGCGAGAGAAGAGAAATGGGTGGAGAGGGTGGTGGTGGCGGCGAGCTTAGGTGCATTGTGGTGGTGGAGATTGAGGGAGGATGTGGAGAGTTTGGTGGTTATGGTTGAGGCCAAGACAGAGCAATTGATGGATGTGAGAGTTAGTGATTTTGTGGGGTGGTGGCTTTATTATCTTACTCTTACAATTGGGATAGTAAGGGTTCTAAGGGGTCTTATGTGGATGGTCACTGTTTGTCTATGCAGAAGAAGAAGAAGAAGGGCAACAGGGGTTTCAACGGTGGTGGAACATTGTCAGATTGATGATAAGGTGTAA
Predicted protein sequences of Glyma19g40460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g40460.1 sequence type=predicted peptide gene model=Glyma19g40460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVAMGNLQQKAKELFKFKCLTPKEMFYLITFTLLSLLLPLSFLLLAKFSDAQYYLQTLAWYHSPQHFPYVLTLALHINPLILYVLVSIISMASLIHGLTGKIIILSDSLSSSSTFLQPRILTAWIVLCTFQVCVGLGIEGSIEAGLYDSNDESMSFKFGVERILLSRVVFLLGLHETMQVWARMVVRPVVDDTVFGVAAREEKWVERVVVAASLGALWWWRLREDVESLVVMVEAKTEQLMDVRVSDFVGWWLYYLTLTIGIVRVLRGLMWMVTVCLCRRRRRRATGVSTVVEHCQIDDKV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
