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Report for Sequence Feature Glyma19g40430

Feature Type:gene_model
Chromosome:Gm19
Start:46838288
stop:46845575
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g40430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02020AT Annotation by Michelle Graham. TAIR10: SET domain-containing protein | chr4:886693-891743 FORWARD LENGTH=856 SoyBaseE_val: 4.00E-137ISS
GO:0000956GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006349GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of gene expression by genetic imprinting SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007267GO-bp Annotation by Michelle Graham. GO Biological Process: cell-cell signaling SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0009960GO-bp Annotation by Michelle Graham. GO Biological Process: endosperm development SoyBaseN/AISS
GO:0010048GO-bp Annotation by Michelle Graham. GO Biological Process: vernalization response SoyBaseN/AISS
GO:0010050GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative phase change SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0003727GO-mf Annotation by Michelle Graham. GO Molecular Function: single-stranded RNA binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1079 KOG Transcriptional repressor EZH1 JGI ISS
PTHR22884Panther SET DOMAIN PROTEINS JGI ISS
PTHR22884:SF18Panther ENHANCER OF ZESTE, EZH JGI ISS
PF00856PFAM SET domain JGI ISS
UniRef100_G7KSU0UniRef Annotation by Michelle Graham. Most informative UniRef hit: MEDEA n=1 Tax=Medicago truncatula RepID=G7KSU0_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E5D0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E5D0 related cluster n=1 Tax=unknown RepID=UPI000233E5D0 SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g40430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40430
ParalogEvidenceComments
Glyma03g37841 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g216600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g40430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g40430
>Glyma19g40430.2   sequence type=CDS   gene model=Glyma19g40430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACGACATGAAGAGGCAACAAAAGATTCTACTAGAAGAACCTTGAAGACCAAGATAAAACAATTGACAAATCAAGTCCATGCGGAGCGAGAGACATCAATTAAAGAGCAAGTTCAAAAACATTTGGAAAATCTTAAGCCTTTGTTTTCAAAGGTCAACTCAGCAATTTCAAGGAGAGAGTCTTTGCAAGATGAGAAAAATGTCAATATGCTTTCATCAAGAGTTAACAAGCCATTTTGCAAGCATAATGGTTTCCCTAAAGGTGTGGAAGGGAAAGATTGCATGAACAAATTGGACATTACATTTGCAAAAAGAACTAGAATTCCACACCCACCAAAATTACCACCATATACGGCTTGGGTATATGTAGCCAGAAACGTAAGAATGGCTGAAGACCAATCTATCATTGGAAAAATGCAGATGTACTATGACAAAAATGGTGGTGAAATGATGATATGCAGTGACAATGAGGAAGAAATGGTGAATCCCAAAGATGCCAAACATGACTTTACGGAGGCTGAAGATCTAATTTTGCGGATGACACTTGAGGAATGCAAGTCTTCTGAGGAGGCATTGAGTATCATACAAGAGTTTGTTAAGACTACTGATTCACAAATTCAGGAAAGGTATAAAAAACTCAAGAAAAAGAATATGGAAAGTCTAGATGATCATTCTGAAGATTGTCATTGTAAAGGATGCAAGTGTCACCTTGGAATATGTTTGGAGAAAAGCTTGAGTGCTACTTTAGAATCTTTTGATAACATTTTTTGTCGTCAGTGCTTGAGTGAAAAGCAACAAGTGTGGTCTGAACATGAAGGTGATAAGCAACCATGCAGTGACCAGTGTTACCTACTGGACAAGGGAGTTATGGAAGGACAAAAAGATATTCAGTTGTCTAATTCAACGAAAGTGCAAGCTGATGAGATGACAAATAACTCAAATTGGAAACAGCTAGAGAAAAATTTATATTTGAAGGGAGTAGAATTGTTTGGAAAAAATAGTTGCCTTGTAGCTCGAAACTTACTTCCTGGCTTTAAGACTTGCTTAGAAGTAGCTAGGTACATGTTTGCTAGTGGAGAGTCAATGCCTTATGAATCCATACCAAGTTCAATCACAGACATAAATGATAAGATTAATGCAGAGTACATAATGGGGTGGGAGAAGTGGTTTGATGATGATGGAAAATTAAGTATTCTACATACAATATGCAGAAGAATTGATCATGGGAAAGACCAATGTGATAAGCAATATACTCCATGTGGGTGTAAGGGAATATGCATAGAGGGATGTCCTTGTCTTAGTACGGGAACTTGTGAAAAATACTGTGGGTGTTCAAAGTTATGCAATAATCGATTCAAAGGATGTTATTGTTTTAAGAGTCAATGTAGAAGCCAACTATGTCCATGCTTTGCAGCAAACCGTGAATGTGACCCAGATGTCTGTCGAAATTGTTGGGTTAGTTGCGGTGATGGTTCATTAGGGGAGCCACCTCGACACGGAGATGGTCAATGTGCAAACATGAATCTTCTTTTAGGGAAAAAAGAAAGGATTCTTTTGTCAAAGTCAAATGTTGCAGGATGGGGAGCCTTCACAAAGAACCCAATTATAAAAAATACTTGTCTAGGAGAGTACACAGGTGAACTAATCACTCACAGAGAAGCAGAGAAACGTGGGAAACTATATGACCGTATAAACAATTCATATCTTTTTAACGTCAATGATAAGTGGGTTATTGATGCACGCCGCTTTGGGAATAAGTTAAAATTTGCAAATCACTCATCAAAACCCAACTGCTATGCAAAGGTGATGTTGGTTGGAGGAGATCATCGAGTTGGCATATTTGCCAAGGAAAACATTAAAGCCGGTGATGAGCTTTTCTATCATTATTACTATAATGAAGAGTGTGCACCACCATGGGCTCTTCCACCAAAAGTCGAGGCTTCTAAGACACATAAATATGTTTCTCAGGGCAGGGCAAAGAAACATTGA
Predicted protein sequences of Glyma19g40430
>Glyma19g40430.2   sequence type=predicted peptide   gene model=Glyma19g40430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KRHEEATKDSTRRTLKTKIKQLTNQVHAERETSIKEQVQKHLENLKPLFSKVNSAISRRESLQDEKNVNMLSSRVNKPFCKHNGFPKGVEGKDCMNKLDITFAKRTRIPHPPKLPPYTAWVYVARNVRMAEDQSIIGKMQMYYDKNGGEMMICSDNEEEMVNPKDAKHDFTEAEDLILRMTLEECKSSEEALSIIQEFVKTTDSQIQERYKKLKKKNMESLDDHSEDCHCKGCKCHLGICLEKSLSATLESFDNIFCRQCLSEKQQVWSEHEGDKQPCSDQCYLLDKGVMEGQKDIQLSNSTKVQADEMTNNSNWKQLEKNLYLKGVELFGKNSCLVARNLLPGFKTCLEVARYMFASGESMPYESIPSSITDINDKINAEYIMGWEKWFDDDGKLSILHTICRRIDHGKDQCDKQYTPCGCKGICIEGCPCLSTGTCEKYCGCSKLCNNRFKGCYCFKSQCRSQLCPCFAANRECDPDVCRNCWVSCGDGSLGEPPRHGDGQCANMNLLLGKKERILLSKSNVAGWGAFTKNPIIKNTCLGEYTGELITHREAEKRGKLYDRINNSYLFNVNDKWVIDARRFGNKLKFANHSSKPNCYAKVMLVGGDHRVGIFAKENIKAGDELFYHYYYNEECAPPWALPPKVEASKTHKYVSQGRAKKH*






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