Glyma19g40410 - SoyBase

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Report for Sequence Feature Glyma19g40410

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46823778
stop:	46829873
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47390	AT	Annotation by Michelle Graham. TAIR10: Prolyl oligopeptidase family protein \| chr2:19442278-19446253 REVERSE LENGTH=961	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
KOG2100	KOG	Dipeptidyl aminopeptidase	JGI		ISS
PTHR11731	Panther	PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED	JGI		ISS
PTHR11731:SF5	Panther	ACYLAMINO-ACID-RELEASING ENZYME	JGI		ISS
PF00326	PFAM	Prolyl oligopeptidase family	JGI		ISS
UniRef100_G7KST7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acylamino-acid-releasing enzyme n=1 Tax=Medicago truncatula RepID=G7KST7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NBC6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NBC6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g40410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40410

Paralog	Evidence	Comments
Glyma03g37810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g216400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g40410

Limit To All Plant Sequences

>Glyma19g40410.2   sequence type=CDS   gene model=Glyma19g40410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGACTTGACAAACTGTATAATCGCTTTTTGCTCCCTTCTAATTCCTCTCTTCTTCCTCTCGCTCCTCCGTTGCGCCTCACGCTCCGTCACCGAACCGCTGCCAACTTCGCTTCCATGGCTTCCTCGCGGTTGCGCAATTTAGCACCTCTTGCCGCTGCTCCCGCTCAAGACGCCGCGGCTGCCTCCATTTCTTCCTCTGCCAACGCCGCTGCTTCCGCTGATTACGATGATGAGTCAACTGTAGGAGTAAGATATCACGTCCCTCCATCTGTGATCAGTGATATTGTTGATGCTCCACCTGTACCTGCATTGTCATTTTCACCACTTAGGGACAAAATTATTTTTCTCAAGCGAAGAGCTTTACCTCCACTGGCAGAAATAGCAAGGCCGGAGGAAAAGTTGGCTGGTATACGTATTGATGGAAAGTGCAATACTAGGAGTCGCATGTCATTCTACACTGCTATAGGGATCCATCAAATTCTTCCTGATGGTACATTAGGGCCAGAGACTGAGGTGTCTGGTTTCCCCGTTGGTGCTAAAATAAATTTTGTTTCTTGGTCTCCTGATGGTTGTCATTTGTCCTTTAGCACTCGTGTGAATGAGGAGGACCATGATAGCAGTAAACTCACAGTATGGATTGCAGATGTGAAAACAGGGATAGCTAGAAAGTTGTTTCAGTCACCTAATGTACATTTGAATGCAGTTTTTGACAATTATGTTTGGGTAAATAATTGTTCATTGTTAGTTTGCACCATTCCATCATCCCGTGGAGCTCCTCCAAAGAAACCTTTGGTTCCCAGTTGCCCAAAAATTCAATCCAACGAGGCGAGAAGCACTATTCAAGTAAGAACATTCCAGGATTTGCTGAAGGATGAATACGATGAAGATTTGTTTGACTACTATGCCACCTCACAGCTTGTTTTGGCTTCTTTGGATGGTACTACAAAAGAAATTGGCCCACCAGCGGTTTATACATCTATGGACCCTTCCCCAGATCAGAAGTACATTTTGATTAGTTCACTTCACAGGCCATACTCCTTCATTGTAACTTATGGAAGATTTCCAAAGAAGGTAGAGTTATGGAGTGCTGATGGAAAATTAATCAGGGAGCTCTGTAACTTGCCCCTTGCTGAGGACATTCCAATTGCATTCAATAGTGTGCGAAAAGGGATGCGTTCCATTAATTGGAGAGCTGATACGCCATCTACTCTTTACTGGGTAGAAACTCAAGATGGAGGTGATGCAAAGGTGGAAATTTCTCCTCGTGATATAATTTATACACAGCCTGCTGAACCACTAGAAGGTGAACAGCCAACAATATTACACAAGCTTGATTTCCGCTATGGAGGGGTTTCATGGTGTGATGATTCACTGGCTTTGGTATATGAATCCTGGTACAAAACACGGAAAATAAGAACATGGGTAGTCTCTCCTGGATCTGAAGATGTAGCTCCACGCATCCTATTTGATAGATCTTCAGAAGATGTGTACTCTGATCCCGGCTCTCCTATGATGCGGAGAACTCAAGCTGGGACATACATTATTGCCAGGATTAAGAAGGAAAGTGATGAAGGAAGATATATTATACTGAATGGGATTGGTGCTACACCAGAAGGAAACATTCCATTCCTTGATCTGTTTGACATAAACACTGGTAAAAAAATGGAGCGAATCTGGGAGAGCAATAAGGAAAAGTATTATGAGACTGTTGTTGCTCTAATGTCTGACCAGGAAGAAGGGTATTTGTATTTAGATAAACTGAAGATACTGACTTCTAAAGAGTCAAAAACTGAAAACACCCAGTATTATTTTGTTAGCTGGCCAGATAAAAAAGTAGTTCAGGTTACAAATTTCCCTCATCCATATCCTCAGCTCGCATCATTGCAGAAAGAGATGATCAAGTATCAAAGAAAAGACGGGGTTCAACTTACTGCTACATTATACCTGCCACCAGGTTACAATCCATCAACAGATGGCCCTTTGCCATGCCTGGTTTGGTCTTACCCAGGAGAATTTAAAAGCAAAGATGCTGCTGGACAAGTTCGTGGTTCTCCAAATGAATTTGCTGGAATAGGATCCACATCAGCCCTTCTTTGGCTGGCCAGAAGGTTTGCAATTCTATCTGGGCCTACCATTCCTATTATTGGCGAGGGTAATGAAGAGGCAAATGATAGGTATGTAGAACAATTAGTTGCAAGTGCAGAGGCTGCTGTGGAGGAAGTCATCCGGCGTGGGGTGGCTGATCCGAAGAAAATAGCTGTTGGCGGACATTCATATGGTGCATTCATGGCTGCTAACCTCCTGGCACATGCACCACATCTTTTCTGTTGTGGAATTGCTCGTTCTGGTGCTTACAACAGAACACTTACTCCTTTTGGTTTTCAGAATGAAGACAGAACTCTTTGGGAGGCCACTAATACTTATGTAGAGATGAGTCCTTTTATGTCGGCTAATAAAGTTAAGAAGCCCATCTTGCTTATTCATGGGGAAGAGGATAACAATCCAGGAACATTAACCATGCAGTCAGGCAGGTTTTTCAACGCTCTAAAGGGTCATGGTGCTCTTTGTCGGCTGGTGATTTTGCCTCATGAGAGTCACGGTTACACTGCCAGAGAAAGCATCATGCATGTCCTTTGGGAAACAGATAGATGGCTGTATAAACACTGTGTATCAAACAGTTCTGATGCAGTAGAAGACCATGCTACTGGCACAGTCAAAGAACAAGTTAGCAAAGGAACCATAGATGCTGAAAGCAAAGTGGTTGCAACAAGCGGAGGTGGCAGTGGAGAGGTGTCTGATCTTGAGTATGAAGAATTTCATTCTCTGCCAAGATCATACTTGTGA

Predicted protein sequences of Glyma19g40410

Limit To All Plant Sequences

>Glyma19g40410.2   sequence type=predicted peptide   gene model=Glyma19g40410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLDKLYNRFLLPSNSSLLPLAPPLRLTLRHRTAANFASMASSRLRNLAPLAAAPAQDAAAASISSSANAAASADYDDESTVGVRYHVPPSVISDIVDAPPVPALSFSPLRDKIIFLKRRALPPLAEIARPEEKLAGIRIDGKCNTRSRMSFYTAIGIHQILPDGTLGPETEVSGFPVGAKINFVSWSPDGCHLSFSTRVNEEDHDSSKLTVWIADVKTGIARKLFQSPNVHLNAVFDNYVWVNNCSLLVCTIPSSRGAPPKKPLVPSCPKIQSNEARSTIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKEIGPPAVYTSMDPSPDQKYILISSLHRPYSFIVTYGRFPKKVELWSADGKLIRELCNLPLAEDIPIAFNSVRKGMRSINWRADTPSTLYWVETQDGGDAKVEISPRDIIYTQPAEPLEGEQPTILHKLDFRYGGVSWCDDSLALVYESWYKTRKIRTWVVSPGSEDVAPRILFDRSSEDVYSDPGSPMMRRTQAGTYIIARIKKESDEGRYIILNGIGATPEGNIPFLDLFDINTGKKMERIWESNKEKYYETVVALMSDQEEGYLYLDKLKILTSKESKTENTQYYFVSWPDKKVVQVTNFPHPYPQLASLQKEMIKYQRKDGVQLTATLYLPPGYNPSTDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEFAGIGSTSALLWLARRFAILSGPTIPIIGEGNEEANDRYVEQLVASAEAAVEEVIRRGVADPKKIAVGGHSYGAFMAANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATNTYVEMSPFMSANKVKKPILLIHGEEDNNPGTLTMQSGRFFNALKGHGALCRLVILPHESHGYTARESIMHVLWETDRWLYKHCVSNSSDAVEDHATGTVKEQVSKGTIDAESKVVATSGGGSGEVSDLEYEEFHSLPRSYL*

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