Glyma19g40350 - SoyBase

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Report for Sequence Feature Glyma19g40350

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46781720
stop:	46791798
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02070	AT	Annotation by Michelle Graham. TAIR10: MUTS homolog 6 \| chr4:906079-912930 FORWARD LENGTH=1324	SoyBase	E_val: 0	ISS
GO:0000710	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic mismatch repair	SoyBase	N/A	ISS
GO:0006200	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP catabolic process	SoyBase	N/A	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006290	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine dimer repair	SoyBase	N/A	ISS
GO:0006298	GO-bp	Annotation by Michelle Graham. GO Biological Process: mismatch repair	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0009411	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV	SoyBase	N/A	ISS
GO:0043570	GO-bp	Annotation by Michelle Graham. GO Biological Process: maintenance of DNA repeat elements	SoyBase	N/A	ISS
GO:0045910	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of DNA recombination	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0000228	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromosome	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0032301	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: MutSalpha complex	SoyBase	N/A	ISS
GO:0000400	GO-mf	Annotation by Michelle Graham. GO Molecular Function: four-way junction DNA binding	SoyBase	N/A	ISS
GO:0003684	GO-mf	Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008094	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity	SoyBase	N/A	ISS
GO:0032137	GO-mf	Annotation by Michelle Graham. GO Molecular Function: guanine/thymine mispair binding	SoyBase	N/A	ISS
GO:0032138	GO-mf	Annotation by Michelle Graham. GO Molecular Function: single base insertion or deletion binding	SoyBase	N/A	ISS
KOG0217	KOG	Mismatch repair ATPase MSH6 (MutS family)	JGI		ISS
PTHR11361	Panther	DNA MISMATCH REPAIR MUTS RELATED PROTEINS	JGI		ISS
PTHR11361:SF31	Panther	MUTS HOMOLOG 6, MSH6	JGI		ISS
PF00488	PFAM	MutS domain V	JGI		ISS
PF01624	PFAM	MutS domain I	JGI		ISS
PF05188	PFAM	MutS domain II	JGI		ISS
PF05190	PFAM	MutS family domain IV	JGI		ISS
PF05192	PFAM	MutS domain III	JGI		ISS
UniRef100_G7KST2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA mismatch repair protein Msh6-1 n=1 Tax=Medicago truncatula RepID=G7KST2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NBC1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBC1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g40350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40350

Paralog	Evidence	Comments
Glyma03g37750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g216000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g40350

Limit To All Plant Sequences

>Glyma19g40350.1   sequence type=CDS   gene model=Glyma19g40350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCTTCCCGCCGCAACACCAACGGTCGATCACCGCTCGTCAATCAACAGAGTCAAATCACTTCCTTCTTCACCAAATCCGCTTCCCCTTCGCCCTCTCCCACTCTCTCCAAAACCAACCCTAACCCTAACCCTAACCCTAACCCTAGTCCCACCCCTGCTACTCCTTCTCCTCTCAATCCCAAACGCTCCAAGCCCCTTCTTGTAATCGGCGCTTCCACTTCTCCACCCTCCGCTTCGCCTTCTCTCTACTTTCAAGAGCTCATTGGCCGAAGGATCAAGGTTTATTGGCCCTTGGACAAAGCCTGGTACGAAGGCTCCGTCAAATCCTTCGATAGCCTCACCTCTAAGCACGTGGTTCGTTACGACGATGGCGAAGAAGAATCCCTCGACCTCTCCAAGGAGAAGATCGAGTGGCTTCAGGAATCGTCTTCCAAGAAACTTAAACGCCTGCGTCGCGGCGTCCCCGCCGTTAGGAAGATGATGATCGACGACGACGACGAAGAAGTTGAAGAAGAAGAAAGTCACAAAAAAGATGATGATGATGATGATGATTCCAATGACGAAGATTGGGGGATGAAGGCTGCATTGGAGGATGCTGGGGATGCCGAAGAAGATACGGATTTAGAGGATGAAAACGACGTGGCAGAGAGGGCTAAAGGGAAAAAGGTAGAGACTAAAAAGCGGAAACTAAGCGGAACAGAGAAACAAGAGCCGGCAAAAAAGAGCAAGAGTGGAGTGGAAGTTGGTAAGGGAGCTTTCAAGCTCTCAGTGTTGGAGCCTACGAGTAATTTGGAGATTAAAGAGACATCTAATGGCACTGACAATGTTGCGATTACTGAGATCTCTGAAAGATTTGCACTGCGTGAAGCTCAGAAATTGCGCTTCCTGAAGGAAGATCGCAGGGATGCCAAGCGAAGGCGACCAGGGGATGAAAATTATGATTCAAGAACAATCTACTTGCCTCCTGATTTCTTAAGGAGTTTGTCAGATGGTCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGTGCGAAAGAGCTTGACTTGCAGTATATGAAGGGAGACCAACCTCATTGTGGATTTCCAGAGAAGAATTTCTCAATGAACGTGGAGAAACTAGCTAGGAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGATACACCTGAACAGCTGGAGCTTCGTCGCAAGGAGAAGGGCTCTAAAGATAAGGTTGTAAGGCGTGAAATATGTTCAGTGGTTACAAAAGGTACATTAACAGATGGGGAGTTGCTGTCAGCAAACCCAGAAGCTGCATATTTAATGGCCCTGACGGAGCATCACGAAAATCACCCAACTGAAGTTTCAGAGCATCTCTATGGTGTTTGTATAGTTGATGTTGCCACAAGTAGAGTCATTCTTGGACAGTTTAAGGATGACTTGGAGTGCAGTGTCTTGTGCTGTATCTTATCTGAGATCAGGCCTGTTGAAATTGTGAAACCTGCTAAACTACTCAGTGCTGAAACGGAGAGAGTACTGCTGAAGCATACCAGAGATCCTTTAGTGAATGAATTAGTTCCAATTGTGGAATTCTGGGATGCTGACAAAACTGTGGATCAATTAAAGAGAATTTATGGGAACTCTAATGATGTTAGTGTTAACAATAATGAGTTAGATTGCCTGCCAGATGTTTTACTGGAGCTGGTGAAAACAGGTGACGACAGTAGAAGTGCACTTTCAGCACTAGGTGGTGCTCTGTATTATCTGAGACAGGCTTTTCTAGATGAGAGATTGCTTAGATTTGCAAAGTTTGAGTTACTTCCTTGTTCTGGTTTTGGTGATCTTGCTTCAAAACCCTACATGGTTCTTGACGCGGCTGCCCTGGAGAATCTTGAGATTTTTGAGAATAGCAGGAATGGAGATTCTTCAGGCACGCTCTATGCCCAACTAAACCAATGCGTTACTGCTTTTGGAAAGAGATTGCTAAAGACTTGGCTTGCAAGACCATTATGTCATGTGGAGTCAGTTAAGGAACGCCAGGAAGCTGTTGCAGGTTTGAAGGGAGTTAATCTACCTTCTGCACTAGAATTTCGAAAAGCATTATACAAGCTACCTGACATGGAGCGGTTGCTTGCCCGCATCTTTTCCTCTAGTGAAGCTAGTGGAAGGAATGCTAATAGAGTGGTTCTGTACGAGGATGCTTCTAAGAAGCAACTGCAAGAGTTTATTTTAGCTCTGCGTGGTTGTGAACAGATGGCTCAAGCATGCTTTTCACTTGGTGTCATTTTGAGTCATGTAAAATCTAGACAACTTCATCATCTGTTAACACCGGGTAAAGTTCTTCCTGATGTTTGTATGGATCTTAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAATTCTGGGCGTATAATACCTCGTGAAGGAGTTGACACAGAGTATGACTCAGCCTGTAAGGCGGTTAAAGAGATTGAGTCCAGTTTATTGAAGCATCTTAAGGAACAAATGAAACTACTTGGAAGCACATCAATTACTTATGTCAATGTTGGAAAGGATACATACCTATTGGAAGTTCCAGAAAATTTGTCTAAGAATATTCCTCGAGATTATGAACTGCGCTCATCCAGAAAAGGCTTCTTTAGATACTGGTCTCCAGATATTAAAGTTTTCTTAAGAGAGCTCTCCCATGCTGAATCTGAAAAGGAGTCCTTGTTGAAAAGTACATTGCAGAGATTAATTGGGCGTTTTTGTGAACATCACGCTAAGTGGAAGCAGTTGGTGTCTACAACTGCAGAACTGGATGTCTTGATCAGTTTAGCAATTGCTGGTGACTACTATGAAGGACCAACATGTAGACCTAGTTTTGTAGGCACATTATGTACAAAAGAAGCTCCTTACCTCCATGCCAAAAGTTTGGGACACCCAGTCCTTAGGAGTGATACCTTAGGCAAGGGTGACTTTGTACCCAATGACATAACCATTGGTGGTTCAGATCATGCTAGCTTTATTCTTCTAACAGGTCCTAACATGGGTGGGAAGTCAACCCTTCTTCGTCAAGTTTGCTTGACTGTGATTTTGGCCCAGGTAGGAGCTGATGTCCCAGCAGAAAGTTTTGATTTGTCCCCTGTTGACCGGATTTTTGTTAGAATGGGGGCCAAAGATAATATAATGGCAGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCATCAATGCTGTCATCAGCTACTTGTAATTCATTGGTGGCTCTGGATGAGCTTGGGCGAGGGACTGCAACTTCTGATGGGCAAGCCATTGCGGAATCAGTATTAGAACATCTTGTGCGGAAGGTGCAGTGTCGCGGATTGTTTTCTACCCACTATCATCGATTAGCTGTTGATTATCTCAAAGATCCGAAGGTCTGTCTCTGCCACATGGCATGCCAAGTTGGTAGTGGAATTGCAGGTTTAGACGAAGTCACCTTTCTTTACAGGCTTACCCCCGGTGCTTGCCCCAAGAGCTATGGTGTTAATGTTGCTCGGATAGCTGGCCTTCCAACTTCTGTGCTTCAGAAGGCTGCTGCCAAATCCAGAGAATTTGAGGCCACTTATGGTAAATGCAGAAAGGTATCTACTGTAACAAACTCTCCCAATAAAAATTGGGTTGATGAGATAGCAGCAATCATTCAAATATTGAACAACGCGGCAACACAGGAAACCATTTGCGTTGGTTCCCTAAGTGAACTTCAGGATAAAGCAAGAGAACTAATGCAAGGATGTTAA

Predicted protein sequences of Glyma19g40350

Limit To All Plant Sequences

>Glyma19g40350.1   sequence type=predicted peptide   gene model=Glyma19g40350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSRRNTNGRSPLVNQQSQITSFFTKSASPSPSPTLSKTNPNPNPNPNPSPTPATPSPLNPKRSKPLLVIGASTSPPSASPSLYFQELIGRRIKVYWPLDKAWYEGSVKSFDSLTSKHVVRYDDGEEESLDLSKEKIEWLQESSSKKLKRLRRGVPAVRKMMIDDDDEEVEEEESHKKDDDDDDDSNDEDWGMKAALEDAGDAEEDTDLEDENDVAERAKGKKVETKKRKLSGTEKQEPAKKSKSGVEVGKGAFKLSVLEPTSNLEIKETSNGTDNVAITEISERFALREAQKLRFLKEDRRDAKRRRPGDENYDSRTIYLPPDFLRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGDQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTDTPEQLELRRKEKGSKDKVVRREICSVVTKGTLTDGELLSANPEAAYLMALTEHHENHPTEVSEHLYGVCIVDVATSRVILGQFKDDLECSVLCCILSEIRPVEIVKPAKLLSAETERVLLKHTRDPLVNELVPIVEFWDADKTVDQLKRIYGNSNDVSVNNNELDCLPDVLLELVKTGDDSRSALSALGGALYYLRQAFLDERLLRFAKFELLPCSGFGDLASKPYMVLDAAALENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLKTWLARPLCHVESVKERQEAVAGLKGVNLPSALEFRKALYKLPDMERLLARIFSSSEASGRNANRVVLYEDASKKQLQEFILALRGCEQMAQACFSLGVILSHVKSRQLHHLLTPGKVLPDVCMDLNHFKDAFDWVEANNSGRIIPREGVDTEYDSACKAVKEIESSLLKHLKEQMKLLGSTSITYVNVGKDTYLLEVPENLSKNIPRDYELRSSRKGFFRYWSPDIKVFLRELSHAESEKESLLKSTLQRLIGRFCEHHAKWKQLVSTTAELDVLISLAIAGDYYEGPTCRPSFVGTLCTKEAPYLHAKSLGHPVLRSDTLGKGDFVPNDITIGGSDHASFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETASMLSSATCNSLVALDELGRGTATSDGQAIAESVLEHLVRKVQCRGLFSTHYHRLAVDYLKDPKVCLCHMACQVGSGIAGLDEVTFLYRLTPGACPKSYGVNVARIAGLPTSVLQKAAAKSREFEATYGKCRKVSTVTNSPNKNWVDEIAAIIQILNNAATQETICVGSLSELQDKARELMQGC*

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