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Report for Sequence Feature Glyma19g40260

Feature Type:gene_model
Chromosome:Gm19
Start:46688807
stop:46693621
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g40260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62600AT Annotation by Michelle Graham. TAIR10: DNAJ heat shock family protein | chr3:23151038-23153346 REVERSE LENGTH=346 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0006984GO-bp Annotation by Michelle Graham. GO Biological Process: ER-nucleus signaling pathway SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0052033GO-bp Annotation by Michelle Graham. GO Biological Process: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005788GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum lumen SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0031072GO-mf Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
KOG0713 KOG Molecular chaperone (DnaJ superfamily) JGI ISS
PTHR24077Panther FAMILY NOT NAMED JGI ISS
PTHR24077:SF69Panther JGI ISS
PF00226PFAM DnaJ domain JGI ISS
PF01556PFAM DnaJ C terminal region JGI ISS
UniRef100_G7KSR8UniRef Annotation by Michelle Graham. Most informative UniRef hit: DnaJ homolog subfamily B member n=1 Tax=Medicago truncatula RepID=G7KSR8_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1NBB0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBB0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g40260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40260
ParalogEvidenceComments
Glyma03g37650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g215100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g40260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g40260
>Glyma19g40260.1   sequence type=CDS   gene model=Glyma19g40260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCATCGAGGAGCCACGCTGTTCTTCCTTCTATTCGCTATCTGCTATTCTCTCATCGCCATTGCTGGAAAGAGCTATTACGATATACTTCAACTGTCGAAGGGTGCATCGGACGAGCAGATAAAGAGGGCGTATAGGAAGCTAGCATTGAAGTACCATCCTGATAAGAACCCCGGCAATGAAGAAGCTAATAAGAAATTTGCTGAGATTAGCAATGCGTATGAAGTGTTGTCGGATAGCGAGAAGAGGAATATTTACGATAGGTATGGTGAGGAAGGTTTGAAGCAGCATGCTGCTAGTGGAGGCAGAGGTGGTGGAATGAACTTCCAAGATATTTTTGGCTCTTTCTTTGGTGGGGGACAAATGGAAGAAGAAGAGAAAATTGTAAAAGGAGATGACGTGGTTGTTGATTTGGATGCAACACTTGAAGATTTGTACATGGGAGGTACCTTGAAGGTTTGGAGGGAAAAGAATGTACTAAAGCCAGCATCTGGGAAAAGACGCTGTAACTGTAGAAATGAGGTTTATCACAAGCAAATTGGGCCTGGGATGTTTCAACAGATGACAGAGCAGGTCTGTGAGCAATGTCCCAACGTCAAATATGTAAGGGAGGGGTATTTCATCACTGTTGATATTGAGAAAGGCATGCAAGATGGGCAGGAGGTGCTATTTTATGAGGACGGTGAACCCATAATTGATGGAGAATCTGGAGATTTAAGGTTTCGTATCCGTACTGCACCTCATGACGTCTTCAGAAGAGAAGGCAATGACTTGCACACTACTGTCACTATAACTCTGGTTCAAGCCCTTGTTGGTTTTGAGAAGACCATTAAACACCTAGATGAGCATCTGGTGGACATAAGCACAAAGGAAATCACAAAGCCAAAGCAGGTGAGGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAGCAACAAAAAAGGAGATCTTTACGTCACTTTTGAGGTTCTATTCCCCACGTCACTAACGGAGGAGCAGAAAACAAAGATAAAAGCAATTCTTGGTTAG
Predicted protein sequences of Glyma19g40260
>Glyma19g40260.1   sequence type=predicted peptide   gene model=Glyma19g40260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHRGATLFFLLFAICYSLIAIAGKSYYDILQLSKGASDEQIKRAYRKLALKYHPDKNPGNEEANKKFAEISNAYEVLSDSEKRNIYDRYGEEGLKQHAASGGRGGGMNFQDIFGSFFGGGQMEEEEKIVKGDDVVVDLDATLEDLYMGGTLKVWREKNVLKPASGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHDVFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISTKEITKPKQVRKFKGEGMPLHMSNKKGDLYVTFEVLFPTSLTEEQKTKIKAILG*






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