SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02700 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02140.1); Has 49 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:588367-589232 FORWARD LENGTH=247 | SoyBase | E_val: 3.00E-54 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0016114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1NBA5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBA5_SOYBN | SoyBase | E_val: 1.00E-171 | ISS |
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Glyma19g40210 not represented in the dataset |
Glyma19g40210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g214500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g40210.1 sequence type=CDS gene model=Glyma19g40210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGTCAAGACTAGCAGAAGCAACAAGGAGAACATCTTGTGCATTATCCTCAACCACTCGCTTCACTCTAAAACGACAACTTTGCTCTGGCACTCGTATCCGAACCGCAGACCCCGAAATTCATTCGGGAGAGCTAGAAGCTGGTCCCAAAGTTCACAGAGGACAACCCCAAGGTATAAGTACACAAGATAAAGCGAAGGAAGCCAGGTATTCTGAAACAGAACGCAATGCGAGCAAAGCGCACGAGATGTTGAAATCTCCAAAATCTCCTTGTGAACCTTCACGGAAACTGAAGAGCGCGGGGGTGAACCAGAGATTGGACCCAAGCATTCAGCAAAAGCGGGAGAAAGGGTCGAAGGTGGGTATTGAAGAGGTGAGCTGTGCTGGTCTTGATGGAACGCCGTGGCCAGAGGACACAAACAAAGGGAAAGAGAAAGAAGATAACAGAGAGTACTTTAAACGCCACAAGGCATCGCCCTTGTCGGAGATAGAGTTTCTGGATTCACGAAAGCCGATTACTCGAGCCTCCGACAAGACCGCGGATTCTGGAAGAGGTGTCGGTGTGATTGGCTGGCTGCCGGAGCAGATGGAGACGGCGGAGGAAACGCTGATGAGGGCCGCTGAGATGTGGCGAGAGAGAGCCATGAGGGGTGATCCTGATGCGCCTCATTCAAGGGTCCTCAGAGCTCTTCGTGGTGAAGACTTTTGA
>Glyma19g40210.1 sequence type=predicted peptide gene model=Glyma19g40210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQSRLAEATRRTSCALSSTTRFTLKRQLCSGTRIRTADPEIHSGELEAGPKVHRGQPQGISTQDKAKEARYSETERNASKAHEMLKSPKSPCEPSRKLKSAGVNQRLDPSIQQKREKGSKVGIEEVSCAGLDGTPWPEDTNKGKEKEDNREYFKRHKASPLSEIEFLDSRKPITRASDKTADSGRGVGVIGWLPEQMETAEETLMRAAEMWRERAMRGDPDAPHSRVLRALRGEDF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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