Glyma19g40141 - SoyBase

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Report for Sequence Feature Glyma19g40141

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46604322
stop:	46609612
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40141

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02210	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). \| chr4:974320-975917 REVERSE LENGTH=439	SoyBase	E_val: 5.00E-138	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_UPI000233E5CB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E5CB related cluster n=1 Tax=unknown RepID=UPI000233E5CB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g40141

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g40141 not represented in the dataset	Glyma19g40141 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40141

Paralog	Evidence	Comments
Glyma03g37521	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40141 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g213800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40141

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g40141

Limit To All Plant Sequences

>Glyma19g40141.1   sequence type=CDS   gene model=Glyma19g40141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGATATTTCATTGATCTTATGTTAGAGCAGGTTGCCCAAGGCCGTAAATTTGAGGATCATTTGTTTAGCAAAAGAGCATGGAAGCATATGTCTACAAAGTTCAATTTTCAGTATGAAAAAGATGTACTCAAGAACCGCCACAAAACATTAAGGAATTTGTACAGGGGCCTTAAGAACCTTCTTGCCCAACCAGGGTTTAGCTGGAACGAAAAGCGAAGTATGGTTATTGCTGGTAATCATGTTTGGGATCAATATCTCAAGGTAGATGCGAATATATGGTCATACAGAGTAAAAAGCATTCCCTATTTCGAAGATCTGTGTACTGTTTATGGACATGAGATGGAAGGAAAAGGAGATGCTGCACCAGAGGAGTCATCTAATTCAGGCGAATATGGAGCAATCGTACCCTTTCTATCCAAGGATATGGCGTCGAAGGAAACAGCATCCTCTTCTGGTACCCGGACCCAGACTTATTGGCGGCCACCAATGGATCGTTACTTCATTAACTTGATGCTTGCCCATGTGCACCAAGGGAACCAATTTGATGGGGTCTTCAGCAAACAAGCATGGGTGGAGATGATCTCATCATTCCATGAAAAATTTGGCTTTGAGTATAGTTTGGAGATTCTTAAGAATAGGTACAAAACTCTGAGAAGGCAATACAATTTAATTAAAAGTCTCCTTCAGTTGGATGGCTTTGCCTGGGATGAAACACGACAAATGGTTATCGCTGATGATTGTGTCTGGCAAGATTATATTAAGGTTCATCCTGATGCACAACAATATATGACCCGACCTTTGCCATACTATAAAGATTTGTGTAAGCATCAAAATGCAGTTGATTTTCAGACCAAGTGTCCTCAGACGTCTAAAACTGGTCAGTCTCCAATTACACCCAATTCCAATGAAGAACAATTTAGCAGTGTCAACGAGTTAGCTAATATAGGTCAGAAGCAAAAACGTCAATTAGAGAAAGGTTCTAATTCTACTAGTCCTAAAAAATCAAGGAATGATGAACAAGGCATGGCTGTTGCTCTCCATGAGATGGCAGCTGTAGTTTCAACTGTATCTGCAAAAAATAATGATACCTCGATATCAATAGAGAATGTCATAGAAGCAGTGCAAGCATTGCATGCTATGGATGATGATCTGGTTTTGGATGCTTGCGATTTCCTGGAGGATGAAAGAAATGCTAAAACATTTCTTGCATTGGATGCCAAGCTTAGAAAGAAATGGTTGATCAGGAAACTTTGCACACAAGTGTAG

Predicted protein sequences of Glyma19g40141

Limit To All Plant Sequences

>Glyma19g40141.1   sequence type=predicted peptide   gene model=Glyma19g40141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRYFIDLMLEQVAQGRKFEDHLFSKRAWKHMSTKFNFQYEKDVLKNRHKTLRNLYRGLKNLLAQPGFSWNEKRSMVIAGNHVWDQYLKVDANIWSYRVKSIPYFEDLCTVYGHEMEGKGDAAPEESSNSGEYGAIVPFLSKDMASKETASSSGTRTQTYWRPPMDRYFINLMLAHVHQGNQFDGVFSKQAWVEMISSFHEKFGFEYSLEILKNRYKTLRRQYNLIKSLLQLDGFAWDETRQMVIADDCVWQDYIKVHPDAQQYMTRPLPYYKDLCKHQNAVDFQTKCPQTSKTGQSPITPNSNEEQFSSVNELANIGQKQKRQLEKGSNSTSPKKSRNDEQGMAVALHEMAAVVSTVSAKNNDTSISIENVIEAVQALHAMDDDLVLDACDFLEDERNAKTFLALDAKLRKKWLIRKLCTQV*

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