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Report for Sequence Feature Glyma19g40050

Feature Type:gene_model
Chromosome:Gm19
Start:46527680
stop:46535817
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02260AT Annotation by Michelle Graham. TAIR10: RELA/SPOT homolog 1 | chr4:985451-991178 FORWARD LENGTH=883 SoyBaseE_val: 0ISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0015969GO-bp Annotation by Michelle Graham. GO Biological Process: guanosine tetraphosphate metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008081GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
PTHR21262Panther GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE JGI ISS
PF01966PFAM HD domain JGI ISS
PF02824PFAM TGS domain JGI ISS
PF04607PFAM Region found in RelA / SpoT proteins JGI ISS
UniRef100_B9SAV1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative n=1 Tax=Ricinus communis RepID=B9SAV1_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233E5C7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E5C7 related cluster n=1 Tax=unknown RepID=UPI000233E5C7 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g37450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g212900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g40050.1   sequence type=CDS   gene model=Glyma19g40050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCTGCATCCTCCTTATCAGTTTCTCTAGAATGCGTGAACGCCTGCAAGCCGTGGAGAGGGGATGGAAATGTAAGATTCGACTGTAGTCTTCTATCGTGCGCGTGGAAAGCTCCGAGGGCTCTCACCGGGTTCCTTGCCAGCACTGCTCATCCTCATCAGTGTTCGAACTTGTCGAATGGGCGTAATGGACGAAGGAACCGGTATAATTTTGGGTGTGAAGCCTTTAGTGTAGGTGGTTCATGCCATGATGAACCACTTGATATCATACTTTTTGAAGGATACTCTAGATCTATCTCGTGCCAAAATGCTCCTAGGAGATGGCAATTGTGTTGTTCTTTGGCCTCGAACACTGTCACTGAGTTTTCCGCGGAAAGTTTGTGGGAGGATCTTAAACCTGCTATCTCGTACCTGTCACCTAAAGAACTGGAGTTAGTCTACAATGCTTTTATGTTGGCGTTTAAAGCTCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCATTCACCCAGTCGAGGTTGCACGCATTCTGGGAGAACTTGAACTTGACTGGGAGTCGATTGCTGCTGGATTACTTCATGATACAGTTGAGGATACAAATGTTGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACTGTGCGGCACATTGTGGAAGGAGAGACCAAGGTGTCGAAACTGGGAAAGTTGAAGTATAAGAATGAAAATGATTCCGTGCAAGATGTGAAAGCAGAAGATCTTCGGCAAATGTTTCTGGCTATGACAGAGGAGGTTCGTGTTATAATTGTCAAATTGGCAGATAGGTTGCATAACATGCGCACACTATCACATATGCCTCCACATAAACAGACTAGCATTGCGATGGAGACATTGCAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTATCGTTTATGTACACAAATGCGGAAGACTATGCTAAGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTCTGGAGGCAAACAAAATGTTGATGAAGAAAATCCAAGATGATCAATTCTTAGACCTTCTAACGGTTAAAACGAAAGTTCGTGCTGTATGTAAAGAGCCTTACAGTATCTATAAAGCTGTTCTCAAATCAAAAAGTTCAATCAGTGAGATTAACCAAATTGCACAGCTTCGCATTATTATTAAACCAAAGCAATGCATTGGGGTTGGGCCTTTATGCAACCCACAGCAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCAGACCACCGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGAGAGAATTTGTCACAGGGTTGGTTGGAAGTGCAACACCAAGTAGTAAAAGCTCAAGAGGGAAGACAGTTTGTCTAAACAACGCCAATATTGCCCTGAGAATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTCGACACCATTACAAGAGATCTGCTGGGCAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGACTATGCTTATATGATACACACTGAAATAGGCAACAAGATGGTAGCTGCAAAGGTCAATGGCAATCTTGTTTCTCCTGCTCATGTACTTGCAAATGCAGAAGTTGTAGAGATAATCACATATAATGCACTTTCCAGCAAATCAGCCTTTCAGAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGTAGTGCAAGACACAAAATAATGAAGTTTCTGAGGGAGCAAGCTGCACGCTCTGCTGCTGATATCACTACGGAAGCAGTCAATGACTTTGTCACTGATTCTGACGGGGATAGTGAATCTGAAGAACTGTCAAAAGGTTCCAGTGGCTCTAAATATACGTGGGGTAAAATGTTTGTGAATGGAGCCGAAATATCAACTTTAGGAAGAAGTGAGACCGTCCTCCAAAGTAACAATGGAAGTGCTTGGATCCCCAAGGTCAATGGAAAACATAATAAGCATGTGCAGCATGAAAGTTTCAACGGCAAAGGGGAGATGTTACTGCAGGGAAACCTTGTCGCAAAGATAATTCAAGTTAACATTCCAAGATATAAGGAAGTCCTGCCAGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGTATAGACCGAAAAGGCATGATGGCTGAGGTCACTGCAGCAATGGCCACTGCAGGCATAGCCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCATGTAGAAGGAAATTTAGAAAATTTGGTCAGTGCTTGCTCTAAAGTGGATCTGATACTGGGTGTTTTGGGATGGTCTACCGGTTGCAGCTGGCCAAGCTTGATGGAAGACCGTGGAGTTCTCGAATGCTAG

>Glyma19g40050.1   sequence type=predicted peptide   gene model=Glyma19g40050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASASSLSVSLECVNACKPWRGDGNVRFDCSLLSCAWKAPRALTGFLASTAHPHQCSNLSNGRNGRRNRYNFGCEAFSVGGSCHDEPLDIILFEGYSRSISCQNAPRRWQLCCSLASNTVTEFSAESLWEDLKPAISYLSPKELELVYNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELLEANKMLMKKIQDDQFLDLLTVKTKVRAVCKEPYSIYKAVLKSKSSISEINQIAQLRIIIKPKQCIGVGPLCNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLQTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSSKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPAHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSAADITTEAVNDFVTDSDGDSESEELSKGSSGSKYTWGKMFVNGAEISTLGRSETVLQSNNGSAWIPKVNGKHNKHVQHESFNGKGEMLLQGNLVAKIIQVNIPRYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRKGMMAEVTAAMATAGIAICSCVAEIDGGRGMAVMVFHVEGNLENLVSACSKVDLILGVLGWSTGCSWPSLMEDRGVLEC*







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