Report for Sequence Feature Glyma19g40050
Feature Type: gene_model
Chromosome: Gm19
Start: 46527680
stop: 46535817
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g40050
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G02260 AT
Annotation by Michelle Graham. TAIR10: RELA/SPOT homolog 1 | chr4:985451-991178 FORWARD LENGTH=883
SoyBase E_val: 0 ISS
GO:0009611 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to wounding
SoyBase N/A ISS
GO:0015969 GO-bp
Annotation by Michelle Graham. GO Biological Process: guanosine tetraphosphate metabolic process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0008081 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity
SoyBase N/A ISS
GO:0046872 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metal ion binding
SoyBase N/A ISS
PTHR21262 Panther
GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
JGI ISS
PF01966 PFAM
HD domain
JGI ISS
PF02824 PFAM
TGS domain
JGI ISS
PF04607 PFAM
Region found in RelA / SpoT proteins
JGI ISS
UniRef100_B9SAV1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative n=1 Tax=Ricinus communis RepID=B9SAV1_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233E5C7 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E5C7 related cluster n=1 Tax=unknown RepID=UPI000233E5C7
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g40050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g40050
Paralog Evidence Comments
Glyma03g37450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g40050 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g212900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g40050
Coding sequences of Glyma19g40050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g40050.1 sequence type=CDS gene model=Glyma19g40050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCTCTGCATCCTCCTTATCAGTTTCTCTAGAATGCGTGAACGCCTGCAAGCCGTGGAGAGGGGATGGAAATGTAAGATTCGACTGTAGTCTTCTATCGTGCGCGTGGAAAGCTCCGAGGGCTCTCACCGGGTTCCTTGCCAGCACTGCTCATCCTCATCAGTGTTCGAACTTGTCGAATGGGCGTAATGGACGAAGGAACCGGTATAATTTTGGGTGTGAAGCCTTTAGTGTAGGTGGTTCATGCCATGATGAACCACTTGATATCATACTTTTTGAAGGATACTCTAGATCTATCTCGTGCCAAAATGCTCCTAGGAGATGGCAATTGTGTTGTTCTTTGGCCTCGAACACTGTCACTGAGTTTTCCGCGGAAAGTTTGTGGGAGGATCTTAAACCTGCTATCTCGTACCTGTCACCTAAAGAACTGGAGTTAGTCTACAATGCTTTTATGTTGGCGTTTAAAGCTCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCATTCACCCAGTCGAGGTTGCACGCATTCTGGGAGAACTTGAACTTGACTGGGAGTCGATTGCTGCTGGATTACTTCATGATACAGTTGAGGATACAAATGTTGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACTGTGCGGCACATTGTGGAAGGAGAGACCAAGGTGTCGAAACTGGGAAAGTTGAAGTATAAGAATGAAAATGATTCCGTGCAAGATGTGAAAGCAGAAGATCTTCGGCAAATGTTTCTGGCTATGACAGAGGAGGTTCGTGTTATAATTGTCAAATTGGCAGATAGGTTGCATAACATGCGCACACTATCACATATGCCTCCACATAAACAGACTAGCATTGCGATGGAGACATTGCAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTATCGTTTATGTACACAAATGCGGAAGACTATGCTAAGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTCTGGAGGCAAACAAAATGTTGATGAAGAAAATCCAAGATGATCAATTCTTAGACCTTCTAACGGTTAAAACGAAAGTTCGTGCTGTATGTAAAGAGCCTTACAGTATCTATAAAGCTGTTCTCAAATCAAAAAGTTCAATCAGTGAGATTAACCAAATTGCACAGCTTCGCATTATTATTAAACCAAAGCAATGCATTGGGGTTGGGCCTTTATGCAACCCACAGCAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCAGACCACCGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGAGAGAATTTGTCACAGGGTTGGTTGGAAGTGCAACACCAAGTAGTAAAAGCTCAAGAGGGAAGACAGTTTGTCTAAACAACGCCAATATTGCCCTGAGAATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTCGACACCATTACAAGAGATCTGCTGGGCAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGACTATGCTTATATGATACACACTGAAATAGGCAACAAGATGGTAGCTGCAAAGGTCAATGGCAATCTTGTTTCTCCTGCTCATGTACTTGCAAATGCAGAAGTTGTAGAGATAATCACATATAATGCACTTTCCAGCAAATCAGCCTTTCAGAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGTAGTGCAAGACACAAAATAATGAAGTTTCTGAGGGAGCAAGCTGCACGCTCTGCTGCTGATATCACTACGGAAGCAGTCAATGACTTTGTCACTGATTCTGACGGGGATAGTGAATCTGAAGAACTGTCAAAAGGTTCCAGTGGCTCTAAATATACGTGGGGTAAAATGTTTGTGAATGGAGCCGAAATATCAACTTTAGGAAGAAGTGAGACCGTCCTCCAAAGTAACAATGGAAGTGCTTGGATCCCCAAGGTCAATGGAAAACATAATAAGCATGTGCAGCATGAAAGTTTCAACGGCAAAGGGGAGATGTTACTGCAGGGAAACCTTGTCGCAAAGATAATTCAAGTTAACATTCCAAGATATAAGGAAGTCCTGCCAGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGTATAGACCGAAAAGGCATGATGGCTGAGGTCACTGCAGCAATGGCCACTGCAGGCATAGCCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCATGTAGAAGGAAATTTAGAAAATTTGGTCAGTGCTTGCTCTAAAGTGGATCTGATACTGGGTGTTTTGGGATGGTCTACCGGTTGCAGCTGGCCAAGCTTGATGGAAGACCGTGGAGTTCTCGAATGCTAG
Predicted protein sequences of Glyma19g40050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g40050.1 sequence type=predicted peptide gene model=Glyma19g40050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASASSLSVSLECVNACKPWRGDGNVRFDCSLLSCAWKAPRALTGFLASTAHPHQCSNLSNGRNGRRNRYNFGCEAFSVGGSCHDEPLDIILFEGYSRSISCQNAPRRWQLCCSLASNTVTEFSAESLWEDLKPAISYLSPKELELVYNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELLEANKMLMKKIQDDQFLDLLTVKTKVRAVCKEPYSIYKAVLKSKSSISEINQIAQLRIIIKPKQCIGVGPLCNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLQTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSSKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPAHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSAADITTEAVNDFVTDSDGDSESEELSKGSSGSKYTWGKMFVNGAEISTLGRSETVLQSNNGSAWIPKVNGKHNKHVQHESFNGKGEMLLQGNLVAKIIQVNIPRYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRKGMMAEVTAAMATAGIAICSCVAEIDGGRGMAVMVFHVEGNLENLVSACSKVDLILGVLGWSTGCSWPSLMEDRGVLEC*