Glyma19g40000 - SoyBase

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Report for Sequence Feature Glyma19g40000

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46486280
stop:	46488350
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02330	AT	Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily \| chr4:1032479-1034928 FORWARD LENGTH=573	SoyBase	E_val: 2.00E-172	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0004857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
PTHR22931	Panther	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	JGI		ISS
PTHR22931:SF5	Panther	METHYLESTERASE INHIBITOR-RELATED	JGI		ISS
PF01095	PFAM	Pectinesterase	JGI		ISS
PF04043	PFAM	Plant invertase/pectin methylesterase inhibitor	JGI		ISS
UniRef100_I1NB84	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1NB84_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E5C4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E5C4 related cluster n=1 Tax=unknown RepID=UPI000233E5C4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g40000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40000

Paralog	Evidence	Comments
Glyma03g37400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g212400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g40000

Limit To All Plant Sequences

>Glyma19g40000.2   sequence type=CDS   gene model=Glyma19g40000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCAATAGCTTGTACTTTCGTATACTCTGTGTTTCCCTTGTGCTATCCTTCTTGACATCCATTTCCATAGCTGATAATAACCATGAAGCCGTTCCACCAGAAACCATATGCTACTCAACCTTAGACCCTTCTTACTGCAAATCTGTGCTTGCTAATCAAAATGGCAGCATATATGACTATTGCCGCATTTCTGTTCGAAAGTCATTGTCTCAGTCTCGTAAGTTCTTGAACAACATGTATTCATATCTTCAACATCCTTCTTCTTATTCTCAACCCACAATTCGTGCTCTTGAGGATTGTCAATTCCTTGCTGAATTAAACTTTGAATACTTATCAACAACACGTGGCACTGTTGATAAAGCCAGCGATGTTCTTCCCACCTCTCAAGCCAGCGATGTTCACACATTGCTTAGTGCTGTTTTGACAAATCAACAAACTTGTTTAGATGGCCTTCAAACTTCAGCTTCAGATTCAAGAGTGAAGAATGATCTTTCTTCCCAACTCTCGGAAAATGCAAAGCTTGACAGTGTCTCGCTTTATTTGTTCACCAAGGCCTGGGATTCTGAGAACAAAACTTCAACATCATGGCAGCACCAGAATGAACGTTTACCCTTGAAGATGCCAAACAAAGTACGTGCCATTTATGATTCCGCGAGAGGCCAGGGGAAAAAACTACTTCAAACAATGGATGATAATGAAAGCGTACTTGTGAGTGATATTGTGGTGGTTAGTAAGGATGGAAGCGGGAACTTTATCACTATCAATGATGCCATAGCTGCTGCACCAAATAACACAGCTGCCACCGATGGCTACTTCATTATTTTTATCGCCGAGGGTGTATATCAAGAGTACGTATCTATAGCCAAAAGCAAGAAGTTCTTGATGCTAATTGGAGATGGAATCAATCGGACAATCATCACTGGCGATCACAACGTTGTTGATGGCTTTACAACATTTAACTCAGCCACATTCGCTGTGGTAGCACAAGGATTTGTGGCAATGAACATAACATTCCGCAACACAGCTGGGCCAAGCAAGCACCAAGCAGTTGCAGTAAGAAATGGAGCGGATATGTCCACCTTCTACAGCTGTAGCTTTGAAGGGTATCAAGACACACTATACACGCATTCTCTGAGGCAGTTTTATCGCGAATGTGACATATATGGCACAGTTGACTTCATATTTGGAAATGCAGCTGTTGTTTTACAAAACTGCAACATGTATCCCCGCCTCCCCATGAGTGGACAATTCAATGCCATCACTGCACAAGGTCGAACTGATCCAAATCAAAACACTGGCATTTCCATACAAAATGCGACCATAAAAGCAGCACAGGATCTGGCTCCCGTGGTTGGTACTGTGGAAACATTCCTTGGGAGGCCATAG

Predicted protein sequences of Glyma19g40000

Limit To All Plant Sequences

>Glyma19g40000.2   sequence type=predicted peptide   gene model=Glyma19g40000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFNSLYFRILCVSLVLSFLTSISIADNNHEAVPPETICYSTLDPSYCKSVLANQNGSIYDYCRISVRKSLSQSRKFLNNMYSYLQHPSSYSQPTIRALEDCQFLAELNFEYLSTTRGTVDKASDVLPTSQASDVHTLLSAVLTNQQTCLDGLQTSASDSRVKNDLSSQLSENAKLDSVSLYLFTKAWDSENKTSTSWQHQNERLPLKMPNKVRAIYDSARGQGKKLLQTMDDNESVLVSDIVVVSKDGSGNFITINDAIAAAPNNTAATDGYFIIFIAEGVYQEYVSIAKSKKFLMLIGDGINRTIITGDHNVVDGFTTFNSATFAVVAQGFVAMNITFRNTAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNMYPRLPMSGQFNAITAQGRTDPNQNTGISIQNATIKAAQDLAPVVGTVETFLGRP*

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